PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG84385.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 1311aa MW: 137610 Da PI: 6.3176

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG84385.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	27.8	6.5e-09	503	599	2	79
trihelix 2 WtkqevlaLiearremeerlrrgk....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 W + e+++Li++ ++++ r g + W+++ ++m+++gf+rs qC+ +w+nln+ +++ + ++++ ++++s + GBG84385.1 503 WGDYETMVLIRLLLGDKQTGRVGFlvnprsnwggggvfggekerTSNATWRAIEQAMKSEGFKRSWRQCRTRWRNLNRWSQRVIKYDSRQ-NGRRSYW 599 999999999999998888888653333444566666666666668899*****************************9888877777764.4554455 PP

Sequence ? help Back to Top
Protein Sequence Length: 1311 aa Download sequence
MGVPVMLFDG NVGDDAWERL RKELRMRAMR LDILLRKRQQ PPTRQRSTRE QRLTSQRPTS 60 QEATRQQQRW GPRLWTDAAC VGVRTTRGPA AAANATTPYY VANESMIKGV DGERTRGSSS 120 SDVAVGGDLC TPGGSDVGGG GLFAAAGGSS KIVFVPARGS DVGRGTGGLI DLRTRGSSGG 180 GLCTPGGGDV GGGLFAAGAR KIVFVPARGP DDGRGTCGIV DLRTRGSDVE NVCTRGRNVD 240 GGTRGSDGGE VRTRGSDLAV GPRGRPRGSD LAGRKRGSSV FFDGRTRGSG SLAAEAQRPI 300 SEEEEEEEEE EEEEEEEEEG GTRDALSNKD KEKEKEKEKD KGGSEGRVRR GTCVLPRVHG 360 QGKKGEVGMA VRGEGGGGEG GGRVLVVSGE EERDGRRVVR GKVGGDACRD DLASSHHNQG 420 MNTASRVCHV AAAGGVDEMA RDGVVMSREA VDCSSPSSSR RRMIGRRGEE RQVEGDSAAA 480 VAAAGGAEGG PRGRLRRRSR NNWGDYETMV LIRLLLGDKQ TGRVGFLVNP RSNWGGGGVF 540 GGEKERTSNA TWRAIEQAMK SEGFKRSWRQ CRTRWRNLNR WSQRVIKYDS RQNGRRSYWK 600 MNPSQRCQSN LPFNMRRNWF EAIGAARQVY RAAAAAEDDS RRFGVVGGHH HHHPHHQLAG 660 PGVGHVSGSA PDNRDPNNLS GSGHVSGSPA DKQDEHLSGS RHVSGYHNLA GPGVCHVSGS 720 APDSRDPNNL SGSGHVSGSP ADKQDDHLSG SCHVAGSRVD KQDCNNLSGN QPDTQPHNEP 780 EIGHVSGSGA NSQHHQNVSG IGHVSGGSRQ ERHDHNNISG SRSDRQNQNV SEIGHVSGSG 840 ADRQDEKKNV VHAGGVGVEE EERGGHAHRN GGEESSSDEG DLDGVRRGVS SDSGHHNAEG 900 SGDGRVSGSR GCAHQKEEGS SGDGHVSGNL LVCAHHSGAR SSAGNGHSSG DISDDDNITG 960 DDHVSDDDHV AGDDHVAGDD HVAVRQLHSQ HHNTLAEVEE GVSRGCAHEN REGFSGDGHV 1020 SGSLARTHQS PGKSDDVNLS GGDRALKVSG DGAPRISPSR EERHVSSGDG GACHVSSEDE 1080 GACHVSSGDG GACHVLLLSG DEEARQCDGK GSSSGRETRG RSSSPRPDPD TGHVSGSPAD 1140 GFSDDDCDYS SSMSFTDSDR SGPGPGPGHD YDDLSSPSPK RRRLTASEED GNATANAIPM 1200 EMEMEVEVEK GSSVGVLMTE MTSEGGGGGG EGGGGGGGGG GGGGEGGGGI LDECYLEQFP 1260 AEKAWEEVRD AMREDIALQR ETLGMLASAI KTGILGFLAK ELESSKGLHL T

Sequence ? help Back to Top

Protein Sequence Length: 1311 aa Download sequence

MGVPVMLFDG NVGDDAWERL RKELRMRAMR LDILLRKRQQ PPTRQRSTRE QRLTSQRPTS  60
QEATRQQQRW GPRLWTDAAC VGVRTTRGPA AAANATTPYY VANESMIKGV DGERTRGSSS  120
SDVAVGGDLC TPGGSDVGGG GLFAAAGGSS KIVFVPARGS DVGRGTGGLI DLRTRGSSGG  180
GLCTPGGGDV GGGLFAAGAR KIVFVPARGP DDGRGTCGIV DLRTRGSDVE NVCTRGRNVD  240
GGTRGSDGGE VRTRGSDLAV GPRGRPRGSD LAGRKRGSSV FFDGRTRGSG SLAAEAQRPI  300
SEEEEEEEEE EEEEEEEEEG GTRDALSNKD KEKEKEKEKD KGGSEGRVRR GTCVLPRVHG  360
QGKKGEVGMA VRGEGGGGEG GGRVLVVSGE EERDGRRVVR GKVGGDACRD DLASSHHNQG  420
MNTASRVCHV AAAGGVDEMA RDGVVMSREA VDCSSPSSSR RRMIGRRGEE RQVEGDSAAA  480
VAAAGGAEGG PRGRLRRRSR NNWGDYETMV LIRLLLGDKQ TGRVGFLVNP RSNWGGGGVF  540
GGEKERTSNA TWRAIEQAMK SEGFKRSWRQ CRTRWRNLNR WSQRVIKYDS RQNGRRSYWK  600
MNPSQRCQSN LPFNMRRNWF EAIGAARQVY RAAAAAEDDS RRFGVVGGHH HHHPHHQLAG  660
PGVGHVSGSA PDNRDPNNLS GSGHVSGSPA DKQDEHLSGS RHVSGYHNLA GPGVCHVSGS  720
APDSRDPNNL SGSGHVSGSP ADKQDDHLSG SCHVAGSRVD KQDCNNLSGN QPDTQPHNEP  780
EIGHVSGSGA NSQHHQNVSG IGHVSGGSRQ ERHDHNNISG SRSDRQNQNV SEIGHVSGSG  840
ADRQDEKKNV VHAGGVGVEE EERGGHAHRN GGEESSSDEG DLDGVRRGVS SDSGHHNAEG  900
SGDGRVSGSR GCAHQKEEGS SGDGHVSGNL LVCAHHSGAR SSAGNGHSSG DISDDDNITG  960
DDHVSDDDHV AGDDHVAGDD HVAVRQLHSQ HHNTLAEVEE GVSRGCAHEN REGFSGDGHV  1020
SGSLARTHQS PGKSDDVNLS GGDRALKVSG DGAPRISPSR EERHVSSGDG GACHVSSEDE  1080
GACHVSSGDG GACHVLLLSG DEEARQCDGK GSSSGRETRG RSSSPRPDPD TGHVSGSPAD  1140
GFSDDDCDYS SSMSFTDSDR SGPGPGPGHD YDDLSSPSPK RRRLTASEED GNATANAIPM  1200
EMEMEVEVEK GSSVGVLMTE MTSEGGGGGG EGGGGGGGGG GGGGEGGGGI LDECYLEQFP  1260
AEKAWEEVRD AMREDIALQR ETLGMLASAI KTGILGFLAK ELESSKGLHL T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1180	1184	KRRRL