PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GBG83677.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 316aa MW: 33348.9 Da PI: 7.8156 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.6 | 0.0018 | 273 | 295 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C ++F ++ L+ H t H GBG83677.1 273 VCPQCAQVFDDPVALVDHVETqH 295 6*****************99988 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 316 aa Download sequence |
MGSVAFPDLG KHCSVESCKL IDFLPFQCDK CDKVFCLEHR TYQNHQCANA NTGDVAVLVC 60 PMCAKSVRLV PNEDPNITWE RHVQDGCDPS NYERLTQKKA KCPVPGCKEV MTFSNKVTCK 120 ECHVEVCLKH RFGPDHNCRP GSSGSSSHGK GLSSLGEKFL KGLSTRLSSG MPSLSGAMAA 180 VPAKASAEYA SPVPGKSGLK LPSGLFTHPP ASAGGSEVCP QCSTTFGSVE ALIEHVESTH 240 PVAAPRAGGG AQGGAGSGLP RVPVARPIDN VNVCPQCAQV FDDPVALVDH VETQHKNSAA 300 GVRRSLEATA ERCRVS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G41835.1 | 6e-82 | C2H2 family protein |