PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG83373.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 616aa MW: 65434 Da PI: 5.8417

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG83373.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	37.5	6.2e-12	333	407	4	71
trihelix 4 kqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 ++e+++Li+ r e++ + ++++ lk+ lW +v k mre + rs ++Ck++w + + yk++k+++k GBG83373.1 333 EEETMKLIRCRYEVKATHGDDSeawgvakLKQRLWPDVEKLMREANYDRSDEECKNRWHFVLNNYKAVKDHDKWS 407 79********99998887633444444***************************************99863 PP

Sequence ? help Back to Top
Protein Sequence Length: 616 aa Download sequence
MAGDRQPEGL QYIGDWGCTE GSEFDDSISS HLPPNPVRPL YGMVVSSAEG DEDALRRRLR 60 ERAMAMDCHL TQGSPQPTYT PLPVLLGVHS QEPSPAITTP IQRQDVVLVE GGLPTTPTHM 120 SSGGGNGRSG HGSFSPLAAD GGGSPSVTVS SQPRRSMXDL LALSTGNGTG CELTQGSPAS 180 GSTEQTGSGV SAPGHESTRS EGRPSVLVEL IRDSEFGDVE AVEGGLPAEH VAAVTAGGTA 240 QAAARSHDHE LQAPPCSXTT GGDAAVAAEV LAPECSPQSM GESGGTSTLA PLARGGGVRS 300 GHEAGRGQRG RGQPGRGRGG RGRGGRPRPR FGEEETMKLI RCRYEVKATH GDDSEAWGVA 360 KLKQRLWPDV EKLMREANYD RSDEECKNRW HFVLNNYKAV KDHDKWSGSE KYFTMNQTER 420 KKWGLDFLXR REWYNFIDQH EKDKDTINTD DITDPGAETE NVGVGDGGAD ISVGAGEGGD 480 DRXGSGTSSQ PQDNGTNTAG PSLGARSTAV QGNMAAKRRR GGSNAREQAM GAICGAMRDH 540 TTAQVRSDKE HHVIMPEICD KQIAAQERIA KMTCEAMEKD TAARDRGGER MATEIHAGYS 600 VLADAIKSLA NRNATQ

Sequence ? help Back to Top

Protein Sequence Length: 616 aa Download sequence

MAGDRQPEGL QYIGDWGCTE GSEFDDSISS HLPPNPVRPL YGMVVSSAEG DEDALRRRLR  60
ERAMAMDCHL TQGSPQPTYT PLPVLLGVHS QEPSPAITTP IQRQDVVLVE GGLPTTPTHM  120
SSGGGNGRSG HGSFSPLAAD GGGSPSVTVS SQPRRSMXDL LALSTGNGTG CELTQGSPAS  180
GSTEQTGSGV SAPGHESTRS EGRPSVLVEL IRDSEFGDVE AVEGGLPAEH VAAVTAGGTA  240
QAAARSHDHE LQAPPCSXTT GGDAAVAAEV LAPECSPQSM GESGGTSTLA PLARGGGVRS  300
GHEAGRGQRG RGQPGRGRGG RGRGGRPRPR FGEEETMKLI RCRYEVKATH GDDSEAWGVA  360
KLKQRLWPDV EKLMREANYD RSDEECKNRW HFVLNNYKAV KDHDKWSGSE KYFTMNQTER  420
KKWGLDFLXR REWYNFIDQH EKDKDTINTD DITDPGAETE NVGVGDGGAD ISVGAGEGGD  480
DRXGSGTSSQ PQDNGTNTAG PSLGARSTAV QGNMAAKRRR GGSNAREQAM GAICGAMRDH  540
TTAQVRSDKE HHVIMPEICD KQIAAQERIA KMTCEAMEKD TAARDRGGER MATEIHAGYS  600
VLADAIKSLA NRNATQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25990.1	4e-06	Trihelix family protein