PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG82166.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

MYB

Protein Properties

Length: 364aa MW: 38057.4 Da PI: 7.0812

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG82166.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30	1.2e-09	54	98	3	45
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 rWT++Ed+l+ +a + + +W+++a++++ g++ +++ ++ GBG82166.1 54 RWTPQEDKLFEQALADVDENdeaRWEKVAARLP-GKSIDDLVRHYE 98 9******************************.********95 PP
2	Myb_DNA-binding	40.5	6.4e-13	198	242	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + +++G+g+W++I+r + Rt+ q+ s+ qky GBG82166.1 198 PWTEEEHRLFLLGLQKFGKGDWRSISRNFVISRTPTQVASHAQKY 242 7***************************99**********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MLSETRSSGE ASAATTMGDS CLQRFSDSDG GGSDEGQNGN MSTSSGCHVS SPVRWTPQED 60 KLFEQALADV DENDEARWEK VAARLPGKSI DDLVRHYELL VEDIIMIDEG RLALPAYNAT 120 SSVSGEAGLD PGGCGGGAGV VGGGGGSSDT TMVVPSSPGT TSSGGGGGGG GGGGVKKQSS 180 KLSSLGKSAE QERRKGIPWT EEEHRLFLLG LQKFGKGDWR SISRNFVISR TPTQVASHAQ 240 KYFIRLNSQN KDKRRSSIHD ITSVSNGDAM SQSQGPITGQ PAVAPQPIAH PHVHSHASPP 300 PIQPGLYMTS VGQPMGPLPT VMPIRPPPGH HPSRAHLARP VGMTGTGIPM PHMAAYVPQP 360 AMHH

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MLSETRSSGE ASAATTMGDS CLQRFSDSDG GGSDEGQNGN MSTSSGCHVS SPVRWTPQED  60
KLFEQALADV DENDEARWEK VAARLPGKSI DDLVRHYELL VEDIIMIDEG RLALPAYNAT  120
SSVSGEAGLD PGGCGGGAGV VGGGGGSSDT TMVVPSSPGT TSSGGGGGGG GGGGVKKQSS  180
KLSSLGKSAE QERRKGIPWT EEEHRLFLLG LQKFGKGDWR SISRNFVISR TPTQVASHAQ  240
KYFIRLNSQN KDKRRSSIHD ITSVSNGDAM SQSQGPITGQ PAVAPQPIAH PHVHSHASPP  300
PIQPGLYMTS VGQPMGPLPT VMPIRPPPGH HPSRAHLARP VGMTGTGIPM PHMAAYVPQP  360
AMHH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	2e-38	MYB family protein