PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG81800.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

HSF

Protein Properties

Length: 611aa MW: 64775.8 Da PI: 7.1561

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG81800.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	115	4.7e-36	83	173	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d++++ ++sws+n+nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+ + F +g+k+ll++i+ GBG81800.1 83 FLTKTYDMVNDPATDPIVSWSRNNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFASEGFLRGQKHLLKNIH 170 9**************************************************************999.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k GBG81800.1 171 RRK 173 *98 PP

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence
MEGKPGGMLQ AKVERAQPQP GSGQLPSCNG DVGAGGVQRG RASAVAAADH AIGRCSLAAA 60 GDPAALPQPA VDGVVTSGAP TPFLTKTYDM VNDPATDPIV SWSRNNNSFV VWNPPEFARD 120 LLPKYFKHNN FSSFVRQLNT YGFRKVDPDR WEFASEGFLR GQKHLLKNIH RRKPLSQSQQ 180 QLQNSSQLPS SAGGCVEVGK FGLEGEIECL KRDKNVLMLE LVRLRQQQQQ QENELQMTNT 240 RLAAVEQRQQ QMMTFLTKAM RNPAFMAQFV QQQKEKGQRL TVRKKRRLPK QDADVNGSTG 300 SNTRQLITYE PQQLKNFEAL LVKLVKGLAR PTTQGSSDEP RVDMAEGMGN PLCGNGQANA 360 AAHQAGSHSR ASAVRLTEVV QAAQQPQLPM PMEEVGGTDT SVGGLGVTAM ASSPSPSPLA 420 LPIHGPAAQP QYAMAAVGMP VGTGFAAATA PQMEVGGDRL HRPMNGGGHL VTHPTSDANR 480 RGLVGCENAR HHPVAGVGNG IQLGGGDSVG MTMNGVREVA AAASGTQGEG TTSMSDGVLC 540 LNDMDRESQM GSSDIVGPLH DTAFWDQFWS SESSAGDETC KLDDSSGGEL TIVAPGSLSG 600 ADIGTAVVAM V

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence

MEGKPGGMLQ AKVERAQPQP GSGQLPSCNG DVGAGGVQRG RASAVAAADH AIGRCSLAAA  60
GDPAALPQPA VDGVVTSGAP TPFLTKTYDM VNDPATDPIV SWSRNNNSFV VWNPPEFARD  120
LLPKYFKHNN FSSFVRQLNT YGFRKVDPDR WEFASEGFLR GQKHLLKNIH RRKPLSQSQQ  180
QLQNSSQLPS SAGGCVEVGK FGLEGEIECL KRDKNVLMLE LVRLRQQQQQ QENELQMTNT  240
RLAAVEQRQQ QMMTFLTKAM RNPAFMAQFV QQQKEKGQRL TVRKKRRLPK QDADVNGSTG  300
SNTRQLITYE PQQLKNFEAL LVKLVKGLAR PTTQGSSDEP RVDMAEGMGN PLCGNGQANA  360
AAHQAGSHSR ASAVRLTEVV QAAQQPQLPM PMEEVGGTDT SVGGLGVTAM ASSPSPSPLA  420
LPIHGPAAQP QYAMAAVGMP VGTGFAAATA PQMEVGGDRL HRPMNGGGHL VTHPTSDANR  480
RGLVGCENAR HHPVAGVGNG IQLGGGDSVG MTMNGVREVA AAASGTQGEG TTSMSDGVLC  540
LNDMDRESQM GSSDIVGPLH DTAFWDQFWS SESSAGDETC KLDDSSGGEL TIVAPGSLSG  600
ADIGTAVVAM V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17750.1	2e-82	HSF family protein