PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG81612.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

C3H

Protein Properties

Length: 372aa MW: 40309.9 Da PI: 11.875

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG81612.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.3	4.8e-07	305	326	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e Cr+f + G C++G++C+++H+ GBG81612.1 305 EMCRDFIA-GRCHRGPSCRYSHS 326 88****.***********8 PP
2	zf-CCCH	26.3	1.3e-08	343	364	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lCr+f+ G C++G+ C+F+H+ GBG81612.1 343 PLCRDFSN-GRCSRGSDCRFSHD 364 79****.***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MSCEDDEKAR VSADGDAGRD LAHRQGDCDE EGNPQHGHGS AGRLTGDAKV GVNVNNGSVR 60 EAGEEERGGR RGLSPAVSGG TSPREMRSGG GGGGGIGAPA ADERASLGER ENGGMDGGKP 120 KLSGKEDVSN PVAAAGGGDA GMKDARRSRA RSNSRSRSRS RSGGRKRSRS RSRSRSRSRS 180 PAYRRKDSRR RSRMSRSRSA SRSRSRSSRS PPPRSRAPRS SRSPPPHRDG SRYRRRSYSR 240 SGSPPRYRPR SRSRERKRYD SRSRSPFYRR GGRGPRYAVP PYGIYGGYGG GDSMGGSRWQ 300 MQSPEMCRDF IAGRCHRGPS CRYSHSTTGS DSHERKYSGH MAPLCRDFSN GRCSRGSDCR 360 FSHDSGGTGG GY

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MSCEDDEKAR VSADGDAGRD LAHRQGDCDE EGNPQHGHGS AGRLTGDAKV GVNVNNGSVR  60
EAGEEERGGR RGLSPAVSGG TSPREMRSGG GGGGGIGAPA ADERASLGER ENGGMDGGKP  120
KLSGKEDVSN PVAAAGGGDA GMKDARRSRA RSNSRSRSRS RSGGRKRSRS RSRSRSRSRS  180
PAYRRKDSRR RSRMSRSRSA SRSRSRSSRS PPPRSRAPRS SRSPPPHRDG SRYRRRSYSR  240
SGSPPRYRPR SRSRERKRYD SRSRSPFYRR GGRGPRYAVP PYGIYGGYGG GDSMGGSRWQ  300
MQSPEMCRDF IAGRCHRGPS CRYSHSTTGS DSHERKYSGH MAPLCRDFSN GRCSRGSDCR  360
FSHDSGGTGG GY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	173	RKRSRSRSR
2	165	175	RKRSRSRSRSR
3	166	171	KRSRSR
4	167	175	RKRSRSRSR
5	167	177	RKRSRSRSRSR
6	169	177	RKRSRSRSR
7	169	179	RKRSRSRSRSR
8	171	179	RKRSRSRSR
9	246	256	RKRSRSRSRSR
10	248	256	RKRSRSRSR
11	248	258	RKRSRSRSRSR