PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG79463.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

C3H

Protein Properties

Length: 1078aa MW: 116495 Da PI: 5.0764

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG79463.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.3	2e-06	124	149	4	26
---SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 4 elCrffartG...tCkyGdrCkFaHg 26 +lC a+ G C++G+rC+F+H+ GBG79463.1 124 VLCGAVAKAGtvdGCRFGERCQFNHD 149 58999999999999***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 1078 aa Download sequence
MVPVPDSEQP DSSLQVSSPR SNGGQGRAAL SADDLVARGH APMKCEYLKN SMKTERVNDE 60 ESERLVTMTA TSASQDTADA SDTIDDAAEG AGAVRGTGGK ISAVKKSKKA QKRERRELQR 120 SVLVLCGAVA KAGTVDGCRF GERCQFNHDI AAYLAHKPAD LPGPCPFSTQ LSEPNLSRAC 180 PFGITCRFAS SHPLNLKKAG GTLVSASGVP GSAAATAART EGSNKCPDAD VPEENSKELL 240 VQGGCVRVKH DDNGNRTSTA CPGSEAASER TEEGIVASCP RKEERGSEAA SASTKEGITS 300 SCPKEEGRDE GGEEEEGEEK GTDVLAEGDQ GKGKHNKKGI AASCPRKEGR GSEAASPSTE 360 EGITPCPTKE ERDEVGEAEE GEENGTAVLT EGDQGKGKRN KKGEYHGITG EANSLPKGLR 420 SQLWKNKVKF KRANVALRAL GIFKDKSEKN ANDDCSNGSQ MDHAEPVVES VDTAANSAPG 480 RTETVEAENV DHTATASSDG REPDWKPPSR DDADVATATG RQQNGIELQS DVTYNDSTEH 540 QDGKLHHDVG HNDDDREQVD VIVETQLPPS ASREKAEGDG DDWQAATPAP TCKREVVEDS 600 SFSCNSSSSE ACTMPPDGRK VLGDVQSTVC VGQERDEGAH DDWQGVHLPE AAPGVACKAA 660 TVGASPTSTS DQSKKSLDEE TPHVNVEVTD APRTRYGGDC GVVGEGKELK WGRREKRAID 720 FRGKLYLAPL TTVGNLPFRR VCKQLGADVT CGEMAMATNL LQGQSSEWAL LRRHESEDLF 780 GVQICGGHPD SLARASELIE RVCDVDFVDI NMGCPIDVVC GKGAGSALLN KVSRMEMIVR 840 AVSGTLECPL TVKLRSGYAD NRNTVHTVLP KLREWGASAA TVHPRSRQQR YTKLADWDYL 900 RRKCATETVT DSIQLVGNGD LFSFVDYNEN MEASRLATCM IARGALIKPW LFTEIKEQRH 960 WDISATERLE LLKDYCRFGL QHWGSDNQGV ETTRRFLLEW LSFLHRYIPV GLLERVPQKM 1020 AWRPPAYYGR NDLETLMASD SAADWVRISE LLLGPAPEYF TFTPKHKSNA YDSTVENG

Sequence ? help Back to Top

Protein Sequence Length: 1078 aa Download sequence

MVPVPDSEQP DSSLQVSSPR SNGGQGRAAL SADDLVARGH APMKCEYLKN SMKTERVNDE  60
ESERLVTMTA TSASQDTADA SDTIDDAAEG AGAVRGTGGK ISAVKKSKKA QKRERRELQR  120
SVLVLCGAVA KAGTVDGCRF GERCQFNHDI AAYLAHKPAD LPGPCPFSTQ LSEPNLSRAC  180
PFGITCRFAS SHPLNLKKAG GTLVSASGVP GSAAATAART EGSNKCPDAD VPEENSKELL  240
VQGGCVRVKH DDNGNRTSTA CPGSEAASER TEEGIVASCP RKEERGSEAA SASTKEGITS  300
SCPKEEGRDE GGEEEEGEEK GTDVLAEGDQ GKGKHNKKGI AASCPRKEGR GSEAASPSTE  360
EGITPCPTKE ERDEVGEAEE GEENGTAVLT EGDQGKGKRN KKGEYHGITG EANSLPKGLR  420
SQLWKNKVKF KRANVALRAL GIFKDKSEKN ANDDCSNGSQ MDHAEPVVES VDTAANSAPG  480
RTETVEAENV DHTATASSDG REPDWKPPSR DDADVATATG RQQNGIELQS DVTYNDSTEH  540
QDGKLHHDVG HNDDDREQVD VIVETQLPPS ASREKAEGDG DDWQAATPAP TCKREVVEDS  600
SFSCNSSSSE ACTMPPDGRK VLGDVQSTVC VGQERDEGAH DDWQGVHLPE AAPGVACKAA  660
TVGASPTSTS DQSKKSLDEE TPHVNVEVTD APRTRYGGDC GVVGEGKELK WGRREKRAID  720
FRGKLYLAPL TTVGNLPFRR VCKQLGADVT CGEMAMATNL LQGQSSEWAL LRRHESEDLF  780
GVQICGGHPD SLARASELIE RVCDVDFVDI NMGCPIDVVC GKGAGSALLN KVSRMEMIVR  840
AVSGTLECPL TVKLRSGYAD NRNTVHTVLP KLREWGASAA TVHPRSRQQR YTKLADWDYL  900
RRKCATETVT DSIQLVGNGD LFSFVDYNEN MEASRLATCM IARGALIKPW LFTEIKEQRH  960
WDISATERLE LLKDYCRFGL QHWGSDNQGV ETTRRFLLEW LSFLHRYIPV GLLERVPQKM  1020
AWRPPAYYGR NDLETLMASD SAADWVRISE LLLGPAPEYF TFTPKHKSNA YDSTVENG