PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GBG79389.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
Family HRT-like
Protein Properties Length: 1052aa    MW: 113457 Da    PI: 8.303
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GBG79389.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like45.41.4e-1410111039230
    HRT-like    2 CGviledGsvCkrqPvkgRKRCeeHKGmR 30  
                  CG++ +dG +C+++PvkgRKRC+eHKG+R
  GBG79389.1 1011 CGAKCGDGKICTTPPVKGRKRCAEHKGKR 1039
                  ****************************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 1052 aa     Download sequence    
MEGGVGGGDG DLKGSPVPSS RRRLPPVCSP ATGGGQWKSP AQRPVVRAGG GRSVKQVQPH  60
AAIAEGSPRV RREQRLAEAD ESVTSVRQSP TTRTPRVRRE REIPTWNENI YERPTVDHSV  120
TSVRQSPPVK KAVSDKTGLS RAMRGRCAAA DRSSPDTQNK QENEANPQRQ RVKEKEKEEK  180
EEEEGEEEEE EEEEEEEEEE DEDFVEVERP RRRAIARPEE SIALRLRSAT ARATGRHAPS  240
RVGVRHSTTR KDLLTKLQKE GEGREEDGEE EEEAEEEDGE EEEKKKKVKM LDDVLRASDR  300
SFTGVDVIKI APLRAEDQHQ QYETEEEEGK AEEEEEEEEG AKVEAVVASL RPLAMGAVQL  360
KPVGSKRVTA GKDNDDDGEK ECERRVIEAG GSGGDATSAR AADCRSARVR ARAAPDTVAE  420
APAAAGRRVV GGNRKAYRAR NRQKEEAGGV ELGAQRPTVS SDDAQETAHP RSQTETISLA  480
QTETPTRRRS RRKSTDDRAV SVMSTPKSVC NQTGNPGREG GEGGEGGEGA DREGGEGGEG  540
GEAPLAQSVP KPINGSDSFL SRWSGHTPKW SSRATATTAA VGQSAPSLRL VREAYRKVLH  600
DSIFTDWKVL VGPQNWSDYA EGKEGGERYR TQNLPSYAGP GVYELGVARV GPELTTKSGI  660
PAPPSSFSLK MCSSPQAPRM RLIRSRDVVT TYIGQAENIR NRLQQYGRNG AHLQCSKKTC  720
GPAVKDEEDA GPGPGLQIFS EVFSEGLGVV FRWSSCGSKE EAEAAEAQLL ATFDYAWNKD  780
KNGHRRPADV YKKIAERKAS VLVGFRMPGW RRALFGRRKQ YAGVVVATVR PSASKEESKP  840
VRRRTSSPKI RERADEVHGL PDAGASLGPS PPPNRRRSAC VSQRELGDAL TKRTDEAGVV  900
VRDEGAVRPN GNARNLRSTA KGKVSKVDAE NTTPTGQGEQ GKVVVPWKNF KVLEEQSNAV  960
VESAVLAAKG NNLADITPRK AGGAGAGAGA GAGGGGPDMD AGKGPDLPLL CGAKCGDGKI  1020
CTTPPVKGRK RCAEHKGKRA ASASVTAANR GD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.11e-42HRT-like family protein