PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GBG77606.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
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Family | C3H | ||||||||
Protein Properties | Length: 460aa MW: 48449.4 Da PI: 8.2664 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.6 | 3.2e-11 | 72 | 96 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C +f++ G C+yG++C+F H+ GBG77606.1 72 GEKECAYFMKHGNCSYGASCRFDHP 96 7899********************9 PP | |||||||
2 | zf-CCCH | 35.7 | 1.5e-11 | 125 | 151 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C f++r+G+Ck+G +CkF+H++ GBG77606.1 125 PGEAECAFYMRNGECKFGITCKFHHPK 151 5789*********************96 PP | |||||||
3 | zf-CCCH | 39.8 | 7.7e-13 | 215 | 240 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ C+f+++tG CkyG+ CkF+H++ GBG77606.1 215 GETDCSFYMKTGSCKYGAVCKFNHPE 240 6789********************96 PP | |||||||
4 | zf-CCCH | 37.9 | 3e-12 | 325 | 351 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+ff+r+G+Ck+G++CkF+H++ GBG77606.1 325 PGQPECQFFLRNGECKFGASCKFHHPR 351 5789*********************96 PP | |||||||
5 | zf-CCCH | 35.3 | 2e-11 | 380 | 405 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ C ++++t tCkyG +CkF H+p GBG77606.1 380 GETACAYYMKTATCKYGVQCKFDHPP 405 6789********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 460 aa Download sequence |
MESMGLLPVG SYYSAPPQPS YSMNTMSTMN AIATNKRPYD DGLGSVSMLA KKARPGGEGL 60 GGPQPPYPQR PGEKECAYFM KHGNCSYGAS CRFDHPLWVP SGGVPGWKEN TSGTGGSDTP 120 YPERPGEAEC AFYMRNGECK FGITCKFHHP KERSGKARTN ETPPPGSAST GKDKDSGKFN 180 AIANGSSRNG VMGKDRGLYG KPAALSSKGL PIRPGETDCS FYMKTGSCKY GAVCKFNHPE 240 VAPSGLEDFN VRSGITQSST WPAGGAIMAA SQHPQLISST WGPQGPIAMP TQGMLGVELP 300 MNPQGGLGLS YGGAPAVAAS YPERPGQPEC QFFLRNGECK FGASCKFHHP RKGAVQPVAL 360 PIAPPPGVKL TKAGLPRRPG ETACAYYMKT ATCKYGVQCK FDHPPPGEAV ALATAAAKEG 420 KDGNQDKNAE DGDKSRSGAA GAGSDEVENT DHDLKHEEDS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 2e-76 | C3H family protein |