PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GBG77605.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 488aa MW: 51615.8 Da PI: 8.0139 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.5 | 3.4e-11 | 72 | 96 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C +f++ G C+yG++C+F H+ GBG77605.1 72 GEKECAYFMKHGNCSYGASCRFDHP 96 7899********************9 PP | |||||||
2 | zf-CCCH | 35.6 | 1.6e-11 | 125 | 151 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C f++r+G+Ck+G +CkF+H++ GBG77605.1 125 PGEAECAFYMRNGECKFGITCKFHHPK 151 5789*********************96 PP | |||||||
3 | zf-CCCH | 39.7 | 8.3e-13 | 215 | 240 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ C+f+++tG CkyG+ CkF+H++ GBG77605.1 215 GETDCSFYMKTGSCKYGAVCKFNHPE 240 6789********************96 PP | |||||||
4 | zf-CCCH | 37.8 | 3.2e-12 | 353 | 379 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+ff+r+G+Ck+G++CkF+H++ GBG77605.1 353 PGQPECQFFLRNGECKFGASCKFHHPR 379 5789*********************96 PP | |||||||
5 | zf-CCCH | 35.2 | 2.1e-11 | 408 | 433 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ C ++++t tCkyG +CkF H+p GBG77605.1 408 GETACAYYMKTATCKYGVQCKFDHPP 433 6789********************96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 488 aa Download sequence |
MESMGLLPVG SYYSAPPQPS YSMNTMSTMN AIATNKRPYD DGLGSVSMLA KKARPGGEGL 60 GGPQPPYPQR PGEKECAYFM KHGNCSYGAS CRFDHPLWVP SGGVPGWKEN TSGTGGSDTP 120 YPERPGEAEC AFYMRNGECK FGITCKFHHP KERSGKARTN ETPPPGSAST GKDKDSGKFN 180 AIANGSSRNG VMGKDRGLYG KPAALSSKGL PIRPGETDCS FYMKTGSCKY GAVCKFNHPE 240 VAPSAHSCLD GDSSWNTSSN LEPYLMQYYK SSGLEDFNVR SGITQSSTWP AGGAIMAASQ 300 HPQLISSTWG PQGPIAMPTQ GMLGVELPMN PQGGLGLSYG GAPAVAASYP ERPGQPECQF 360 FLRNGECKFG ASCKFHHPRK GAVQPVALPI APPPGVKLTK AGLPRRPGET ACAYYMKTAT 420 CKYGVQCKFD HPPPGEAVAL ATAAAKEGKD GNQDKNAEDG DKSRSGAAGA GSDEVENTDH 480 DLKHEEDS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12680.1 | 3e-72 | C3H family protein |