PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GBG77332.1
Organism
Chara braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
Family C3H
Protein Properties Length: 333aa    MW: 34083 Da    PI: 7.8716
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GBG77332.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.81.3e-1187113127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 yk +lC+++++ G C++GdrC+FaHg+
  GBG77332.1  87 YKSRLCNRYREPGGCRFGDRCHFAHGE 113
                 99***********************96 PP
2zf-CCCH31.23.9e-10273297126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ykt+ C +fa  GtC +GdrC+FaHg
  GBG77332.1 273 YKTRMCENFAG-GTCTFGDRCHFAHG 297
                 9*********9.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MEGSGPPQKR LRLGSGGDGA DTECHRWNTP EGCPYGDRCS TSGCPYGDSC HFSHYVPGGL  60
SSAALGGPGQ NGKGVVLTDG GVNLGGYKSR LCNRYREPGG CRFGDRCHFA HGEHELRPEN  120
DIQGGEFPGG TGQMGRGGAG SMGGGQFGGM GGGGGRENGG RGGIFPPGTG PEMSAAMSAA  180
ASFGQSTTTK ISIDAHLVGA IIGKAGANVK QICKLTGAKL SIRDHESDAN LRNVEMEGSL  240
EQIDKASNMV RQFLMQRDLT SPPRPSGLGP HNYKTRMCEN FAGGTCTFGD RCHFAHGAHE  300
LKDPPPEARG GGGIGAGGGM VGGAVSKPMG TVM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.17e-40C3H family protein