PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GBG77330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
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Family | C3H | ||||||||
Protein Properties | Length: 368aa MW: 38047.6 Da PI: 8.261 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.6 | 1.6e-06 | 70 | 91 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 + C f+ t C+yGd+C+F H GBG77330.1 70 KACTKFFSTSGCPYGDNCHFLH 91 579999999************* PP | |||||||
2 | zf-CCCH | 33.3 | 8.3e-11 | 125 | 151 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 yk +lC+++++ G C++G++C+FaHg+ GBG77330.1 125 YKSRLCNRYREPGGCRFGEKCHFAHGE 151 99***********************96 PP | |||||||
3 | zf-CCCH | 23.2 | 1.2e-07 | 307 | 331 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk++ C +f GtC +GdrC+FaHg GBG77330.1 307 YKMKMCENFPG-GTCTFGDRCHFAHG 331 67777777776.*************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence |
MEGSGPPQKR LRMGGHGSGD PTDGECHKFN TPEGCPYGDR CRFRHPTSQG EDARQDGAGP 60 QPPAPGSRSK ACTKFFSTSG CPYGDNCHFL HYVPGGPNAV AQALAAAQNG KGSGLVDAGS 120 NLGGYKSRLC NRYREPGGCR FGEKCHFAHG EYELQPGDLT LGGDIHGGVW QTGRGGSGSA 180 LGGQFGGMLG GGRENGRGLF PLGAGPEMSS SMSAAVSFGQ STTTKISIDA SLVGAIIGKA 240 GANVKQICKL TGAKLSVRDH ETDTNLRNVE MEGSLEQIEK ASSMVRQFLM QRDLTPSKPS 300 GLGPHNYKMK MCENFPGGTC TFGDRCHFAH GAHELKDPPP DARGAGGVGG AGGGMLGGSL 360 SKTIGTVM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 2e-41 | C3H family protein |