PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG76848.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

NF-X1

Protein Properties

Length: 1671aa MW: 178679 Da PI: 8.2292

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG76848.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	21	7.4e-07	1271	1289	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CGkH+C+++CH GpC+ C+ GBG76848.1 1271 CGKHRCESICHAGPCGDCK 1289 ******************9 PP
2	zf-NF-X1	17.2	1.1e-05	1334	1351	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C++ CH+G CppC GBG76848.1 1334 CGEHNCKQVCHTGACPPC 1351 ****************** PP
3	zf-NF-X1	26.5	1.4e-08	1469	1486	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H+CqklCH+G+CppC GBG76848.1 1469 CGRHTCQKLCHPGDCPPC 1486 ****************** PP

Sequence ? help Back to Top
Protein Sequence Length: 1671 aa Download sequence
MSPARSVNSP MSGEKAVEVE RTRGCVGIPE TTPCGSSASG GGGRRSKPAS SSQSPVSPAK 60 SPKQQIWRQK RSPGSDGNST SAASSSNGLS AARLSSPPSS SVVDEDKSGA SPSAVTTPPS 120 RKGGRKKNNG PVRALDMDGS LDERAVAVPV TKDAQVQNKA SRSAPSKRAE DASDVRSNGM 180 IGVSKHRPSR GQENAPSMCS AGSIPAAGED GWLGGKEESH VASGGGDDGA LSSVRRSEMG 240 EKEDKAKLAW RARAPSSAEA CCKGSMDGRG DSAEGMLTPP SLKLAGSDGS GQRRTGIDTS 300 STSQDGGSGG NGGPLVNKIK AVARGHRRSV SSSSAADLRD FFAAPSPREW SSDERSRDSR 360 EKMGVAQQRQ SIARQQPLQL QQHNIMREPP LEEPKQKSVS RFHPINSSAL SDGGKNAMLP 420 NASATASVGA NGRGVGGGVG DADPCEGQKG DWRSGKGQHQ LLLQQRRGGS RHARSATWDG 480 QNLSPHLMEI AGGGSWRSNS PQLRPNWESG GREASALDSE GGRANLAGMT SRSLAAGFES 540 ARGSPRGSPR DSPLVSPLVS PLVSPRVSPR VSPRVSPHAS PRGSPRAPDN PRFLDGPRTR 600 DNPRDSALAQ GTQNEYRRQR GHFRNLSWTQ DSLDHGVNFL PQKPLQHERG GYQHRRMGWG 660 QESNWQREQG SYLKENRRSE SGTSTWRGDS TVTPSSSVSS FSSLSSDKAL KKEYGARGEC 720 FSAEQQQQQQ QEGEEEINKC GQTEEAMLAE VDGATATNNV RLEERRGRSP WRKLENSLRN 780 EAGLVDGETS EKRGEPPESE RQVPPWAAGK GGAPPAGESF ARLRRARARS DSFAWADGSW 840 NRGDDSSNWR QQSREDGGEE DSANRRSRSR NTSAERDEER ERRDGTRNYD KSSSGGGDKK 900 GYRGRSISRD ANHNERFERR QQLHAGSLAA NGIEREGEWW TAARKKPIVG SPSSPLRSPG 960 KNQKLSGQLL AFSRTVVPQL VQELEDKLVC GLVECVICCD SVTRRTPVWS CNSCYAIGHL 1020 SCIKKWARIP IPPLLSTCCL ARTAAVSEML EEGDYTPPRT LAKGMWFCAV CRAVQTVPAD 1080 ELSCRCFCGQ VEDPSTDSST AIAPHSCGRT CRKPLDRTKD GASAVHGNLL PSAAEVDSSG 1140 KRGYRCPHVC TLKCHPGPHA TCTALAPPVL CYCRKSEITC KCVDFGRQER SCGAICMREM 1200 PCGRHICPRV CHDGPCGACD ANVKVRCFCG KREEMWACGR VETRREELLL PAIGGRGLYS 1260 CQERCLKLLD CGKHRCESIC HAGPCGDCKL LPAVLRNCPC GKVQIEVLLG GAERKGCLDP 1320 VPTCGAECGK LLPCGEHNCK QVCHTGACPP CEMPVEQSCC CGSVVRSMPC FQFGPACGNG 1380 PAGTDIGRSG DSSQNRGKTI GVFTCDRRCG LLKNCGKHVC SMVCCVSVQQ QTQGTLSALS 1440 VPDVAADPVR VMRVDPHVCL IACSKKLQCG RHTCQKLCHP GDCPPCMDSI ATELKCACGK 1500 SVIPPPVPCG TPLPVCSFEC PKPQLCGCPP NHACHSGDCP PCTLASHCHQ SLERDEQPCI 1560 SENHAESVQT EAREESATRT VAETLAGQET PKPAQLAGPQ EVLEGAISEN RGVIVESSGG 1620 EHDTDVVQEQ QEQQDLTDAI HVTSNGLVTP VGLARRPSFK NALLGIDDNG N

Sequence ? help Back to Top

Protein Sequence Length: 1671 aa Download sequence

MSPARSVNSP MSGEKAVEVE RTRGCVGIPE TTPCGSSASG GGGRRSKPAS SSQSPVSPAK  60
SPKQQIWRQK RSPGSDGNST SAASSSNGLS AARLSSPPSS SVVDEDKSGA SPSAVTTPPS  120
RKGGRKKNNG PVRALDMDGS LDERAVAVPV TKDAQVQNKA SRSAPSKRAE DASDVRSNGM  180
IGVSKHRPSR GQENAPSMCS AGSIPAAGED GWLGGKEESH VASGGGDDGA LSSVRRSEMG  240
EKEDKAKLAW RARAPSSAEA CCKGSMDGRG DSAEGMLTPP SLKLAGSDGS GQRRTGIDTS  300
STSQDGGSGG NGGPLVNKIK AVARGHRRSV SSSSAADLRD FFAAPSPREW SSDERSRDSR  360
EKMGVAQQRQ SIARQQPLQL QQHNIMREPP LEEPKQKSVS RFHPINSSAL SDGGKNAMLP  420
NASATASVGA NGRGVGGGVG DADPCEGQKG DWRSGKGQHQ LLLQQRRGGS RHARSATWDG  480
QNLSPHLMEI AGGGSWRSNS PQLRPNWESG GREASALDSE GGRANLAGMT SRSLAAGFES  540
ARGSPRGSPR DSPLVSPLVS PLVSPRVSPR VSPRVSPHAS PRGSPRAPDN PRFLDGPRTR  600
DNPRDSALAQ GTQNEYRRQR GHFRNLSWTQ DSLDHGVNFL PQKPLQHERG GYQHRRMGWG  660
QESNWQREQG SYLKENRRSE SGTSTWRGDS TVTPSSSVSS FSSLSSDKAL KKEYGARGEC  720
FSAEQQQQQQ QEGEEEINKC GQTEEAMLAE VDGATATNNV RLEERRGRSP WRKLENSLRN  780
EAGLVDGETS EKRGEPPESE RQVPPWAAGK GGAPPAGESF ARLRRARARS DSFAWADGSW  840
NRGDDSSNWR QQSREDGGEE DSANRRSRSR NTSAERDEER ERRDGTRNYD KSSSGGGDKK  900
GYRGRSISRD ANHNERFERR QQLHAGSLAA NGIEREGEWW TAARKKPIVG SPSSPLRSPG  960
KNQKLSGQLL AFSRTVVPQL VQELEDKLVC GLVECVICCD SVTRRTPVWS CNSCYAIGHL  1020
SCIKKWARIP IPPLLSTCCL ARTAAVSEML EEGDYTPPRT LAKGMWFCAV CRAVQTVPAD  1080
ELSCRCFCGQ VEDPSTDSST AIAPHSCGRT CRKPLDRTKD GASAVHGNLL PSAAEVDSSG  1140
KRGYRCPHVC TLKCHPGPHA TCTALAPPVL CYCRKSEITC KCVDFGRQER SCGAICMREM  1200
PCGRHICPRV CHDGPCGACD ANVKVRCFCG KREEMWACGR VETRREELLL PAIGGRGLYS  1260
CQERCLKLLD CGKHRCESIC HAGPCGDCKL LPAVLRNCPC GKVQIEVLLG GAERKGCLDP  1320
VPTCGAECGK LLPCGEHNCK QVCHTGACPP CEMPVEQSCC CGSVVRSMPC FQFGPACGNG  1380
PAGTDIGRSG DSSQNRGKTI GVFTCDRRCG LLKNCGKHVC SMVCCVSVQQ QTQGTLSALS  1440
VPDVAADPVR VMRVDPHVCL IACSKKLQCG RHTCQKLCHP GDCPPCMDSI ATELKCACGK  1500
SVIPPPVPCG TPLPVCSFEC PKPQLCGCPP NHACHSGDCP PCTLASHCHQ SLERDEQPCI  1560
SENHAESVQT EAREESATRT VAETLAGQET PKPAQLAGPQ EVLEGAISEN RGVIVESSGG  1620
EHDTDVVQEQ QEQQDLTDAI HVTSNGLVTP VGLARRPSFK NALLGIDDNG N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10170.1	1e-112	NF-X1 family protein