PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG76723.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

C3H

Protein Properties

Length: 1643aa MW: 178247 Da PI: 7.2604

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG76723.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.4e-05	866	886	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k+F++ +++ H++tH GBG76723.1 866 CETCDKTFKNAEQMSAHLKTH 886 ********************9 PP
2	zf-CCCH	19	2.5e-06	1106	1127	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +Cr +r G C++Gd C+F Hg GBG76723.1 1106 QPCR-LFRIGRCHRGDDCRFLHG 1127 6899.6666*************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1643 aa Download sequence
MFRPPPSATP PPPVPGGPGA AFGKTLGAVG SGGPGQGNGR PWPGRGNMNG SGPGGGRGNR 60 EGRDWAPGRG GRGGGRGQGG RMGEGYGRGF AGDDHIRQGN APGAYRSGDG NGSSFGTGGS 120 SRQGLPAEAV EWGHLPERER ATGGRGGGGG RGGGGGGGGG GGGGRGWGGS EGERSDCRVN 180 QTVANQGHDF GRQSYDYGNR AEGREGSGWA SRGDAGGCVW DPDQGSGAPE GTGRNWNPEG 240 RGRGATREAP TGWAAREGDQ WGADREKGEM GGHGFSHGDH DDAKLERSWN RGQGAGGEGM 300 ANGQVGVGGR GGLWEGWRAN VAGDRHLSPC ENTRQSAERS QERENGWVSG RQDQGMARKG 360 EGNGKGWGGD QTCRERLCGD DQGRRDFGHP DVQDSASRAW GDSSSRTLYE FQAGKTHVQP 420 NQGNVEPMAS SWKPTHQPPL PHQPPLPPRT SLPPPAAPFQ AHHPPERSPR PHQQPLQPEP 480 LPQQCRRPPP SQSPQQSQPP PGAEQGWPPQ HSPRQKMARP LPPKTPPPPH SLQQPHDVNG 540 MSGPPLHHQQ RTPTPPRNLR PPCPPMPPPQ PPWPKPPSQA AQGIARAPPP LQSHVGERAV 600 VVSSGGPVLP FEPRQQGGRV SMPSAGPLPM LPPQPHCRQQ QGQTQIRPPP PMPPHPHSHQ 660 HHSMAAAAAP PIPPIPPIPR GPPHQQHPQC DRPERIVSMQ DEQLRSHQRP WPPNPNDLSN 720 QVGDRVSPML CHTPGTLLMR NGCAPEERGP FPERRGEGLG QEQGRVHQRG EQSSRAWAPG 780 SGRDAQHVGR NSGPGEEPSS RVAWSNGHYA QGGLRVAGSQ PMQQRQGFPQ RYLPGNNLGQ 840 RAPHPPTLNR EYTVPAQQQT TLLRHCETCD KTFKNAEQMS AHLKTHVACD QEGCTFAASG 900 KLLKEHKATA HHVATVSASA LRALAKRPKE SDEDIQRWIA ERKRNFPTDA NITRKKRDAQ 960 RRAETGELVD EEERTRVKRL REILSRQEQM GLPVAEIPPD LLRIRRPVGV RRKPAEEESR 1020 PTSQTGVEKQ RSDTCAARPA AQQLKDVNSN KESGVKDAGN LSAGKEVEDV NGSGKKRSWP 1080 DDEDGRDWDS HVADKRCNKA NARKLQPCRL FRIGRCHRGD DCRFLHGHDQ SEGRRGTNEV 1140 KVNSSVTGNP MDPCNGSLLA KLLSRDIRRD KSFLLQSFRF MVNNNFFADY PQKEPLKFFN 1200 WNASNNELED EAAGTLKVHV AEADKVIADL IDKLDDSDAR GGMSDDKGGD ENEDLGASSG 1260 HRANSRATVS GVHTRGSEND GGHDEDKVEG KDGSCHAVAK RLDNDDDDDD DVEKEEEEEE 1320 EEEGKQGKKE DRLVADKKIS HVEKKKGKRD DGDDGTDDDK EEEEDKDGEG KKEDMEGVED 1380 KEEEEMEGVE EKEKEVHVGE AGNVGHLREH VDACQTRSNG VFTKDADFAE WSSSALDGVG 1440 ATRSGRDGYQ QDLERKVDGT ERGRVQTVRF SSAADAISNV QNMSWNEDSI RRCISRSGAT 1500 EKSDNSIKER EEQRGEEKMA NGVRKVQSAD PAATEEAAKA GAHESSGNGK KRKKKVSETN 1560 GIEKDTRVKH SFKKHRKGKQ SSLPSSGGGS THHMEERMNC VEQEQQQEEC VKIAKGVCKE 1620 AAMEEEACEF IGWGAMCAKM CLS

Sequence ? help Back to Top

Protein Sequence Length: 1643 aa Download sequence

MFRPPPSATP PPPVPGGPGA AFGKTLGAVG SGGPGQGNGR PWPGRGNMNG SGPGGGRGNR  60
EGRDWAPGRG GRGGGRGQGG RMGEGYGRGF AGDDHIRQGN APGAYRSGDG NGSSFGTGGS  120
SRQGLPAEAV EWGHLPERER ATGGRGGGGG RGGGGGGGGG GGGGRGWGGS EGERSDCRVN  180
QTVANQGHDF GRQSYDYGNR AEGREGSGWA SRGDAGGCVW DPDQGSGAPE GTGRNWNPEG  240
RGRGATREAP TGWAAREGDQ WGADREKGEM GGHGFSHGDH DDAKLERSWN RGQGAGGEGM  300
ANGQVGVGGR GGLWEGWRAN VAGDRHLSPC ENTRQSAERS QERENGWVSG RQDQGMARKG  360
EGNGKGWGGD QTCRERLCGD DQGRRDFGHP DVQDSASRAW GDSSSRTLYE FQAGKTHVQP  420
NQGNVEPMAS SWKPTHQPPL PHQPPLPPRT SLPPPAAPFQ AHHPPERSPR PHQQPLQPEP  480
LPQQCRRPPP SQSPQQSQPP PGAEQGWPPQ HSPRQKMARP LPPKTPPPPH SLQQPHDVNG  540
MSGPPLHHQQ RTPTPPRNLR PPCPPMPPPQ PPWPKPPSQA AQGIARAPPP LQSHVGERAV  600
VVSSGGPVLP FEPRQQGGRV SMPSAGPLPM LPPQPHCRQQ QGQTQIRPPP PMPPHPHSHQ  660
HHSMAAAAAP PIPPIPPIPR GPPHQQHPQC DRPERIVSMQ DEQLRSHQRP WPPNPNDLSN  720
QVGDRVSPML CHTPGTLLMR NGCAPEERGP FPERRGEGLG QEQGRVHQRG EQSSRAWAPG  780
SGRDAQHVGR NSGPGEEPSS RVAWSNGHYA QGGLRVAGSQ PMQQRQGFPQ RYLPGNNLGQ  840
RAPHPPTLNR EYTVPAQQQT TLLRHCETCD KTFKNAEQMS AHLKTHVACD QEGCTFAASG  900
KLLKEHKATA HHVATVSASA LRALAKRPKE SDEDIQRWIA ERKRNFPTDA NITRKKRDAQ  960
RRAETGELVD EEERTRVKRL REILSRQEQM GLPVAEIPPD LLRIRRPVGV RRKPAEEESR  1020
PTSQTGVEKQ RSDTCAARPA AQQLKDVNSN KESGVKDAGN LSAGKEVEDV NGSGKKRSWP  1080
DDEDGRDWDS HVADKRCNKA NARKLQPCRL FRIGRCHRGD DCRFLHGHDQ SEGRRGTNEV  1140
KVNSSVTGNP MDPCNGSLLA KLLSRDIRRD KSFLLQSFRF MVNNNFFADY PQKEPLKFFN  1200
WNASNNELED EAAGTLKVHV AEADKVIADL IDKLDDSDAR GGMSDDKGGD ENEDLGASSG  1260
HRANSRATVS GVHTRGSEND GGHDEDKVEG KDGSCHAVAK RLDNDDDDDD DVEKEEEEEE  1320
EEEGKQGKKE DRLVADKKIS HVEKKKGKRD DGDDGTDDDK EEEEDKDGEG KKEDMEGVED  1380
KEEEEMEGVE EKEKEVHVGE AGNVGHLREH VDACQTRSNG VFTKDADFAE WSSSALDGVG  1440
ATRSGRDGYQ QDLERKVDGT ERGRVQTVRF SSAADAISNV QNMSWNEDSI RRCISRSGAT  1500
EKSDNSIKER EEQRGEEKMA NGVRKVQSAD PAATEEAAKA GAHESSGNGK KRKKKVSETN  1560
GIEKDTRVKH SFKKHRKGKQ SSLPSSGGGS THHMEERMNC VEQEQQQEEC VKIAKGVCKE  1620
AAMEEEACEF IGWGAMCAKM CLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	69	77	RGGRGGGRG
2	143	150	GGRGGGGG
3	145	165	RGGGGGRGGGGGGGGGGGGGR
4	147	154	GGRGGGGG
5	148	155	GGRGGGGG
6	149	156	GGRGGGGG
7	151	171	RGGGGGRGGGGGGGGGGGGGR
8	942	957	RKRNFPTDANITRKKR
9	1550	1554	KKRKK
10	1550	1577	KKRKKKVSETNGIEKDTRVKHSFKKHRK
11	1550	1579	KKRKKKVSETNGIEKDTRVKHSFKKHRKGK
12	1551	1578	KKRKKKVSETNGIEKDTRVKHSFKKHRK
13	1551	1580	KKRKKKVSETNGIEKDTRVKHSFKKHRKGK
14	1552	1581	KKRKKKVSETNGIEKDTRVKHSFKKHRKGK