PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GBG75870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 412aa MW: 42450.4 Da PI: 4.7069 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77 | 1.4e-24 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ri++++nrqvtf+kR+ng++KKA ELSvLCd ++ ++if s++kl+ y+s GBG75870.1 9 ERISDERNRQVTFTKRKNGLMKKAMELSVLCDCDIGLVIFNSNNKLFQYAS 59 69***********************************************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence |
MGRRKIRIER ISDERNRQVT FTKRKNGLMK KAMELSVLCD CDIGLVIFNS NNKLFQYAST 60 DMDCILGKFK DLRSEPHEVK NNQDLFIQHF ASQSNGIGAG GHSRGHHMRG EVVGGGPGGG 120 GDGSAARKKR QLSKQLSANG GCHADDDDDD DDMDFDADGE GEGHVEGVGP EEEEEEEEEE 180 DDEEEDCVVP RENSLIKFDR LGSPAVSDCS MSSFSEGGFL FNSFDQGGGG MVTNEAPVGG 240 VVAGIVPGSG GSGGSGGGGG GGGGAGGGGG GELTLRTSLG PSIMSSSHVP LTPRAEKAYS 300 RLGREFDFMT QHLGFAQENN SLTLETKPLP TTLALGHTTT QTDLSGAAGG VPGGTGTMVT 360 GGTMGPGGTG SGGGGGGGGG KNPSSPVQES RHHFCTSPQK RPDSGIEVAP RC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 4e-21 | MIKC_MADS family protein |