PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG74943.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 727aa MW: 78816.1 Da PI: 7.1508

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG74943.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	26.1	2.3e-08	408	459	18	69
trihelix 18 eerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 +++++r + k+ +W +++k m+ g + ++ C +kw+n+ + ykk+++ ++ GBG74943.1 408 GHNYGRMRTKEWKWXDIAKXMANAGRPKDAEDCMKKWDNIFQNYKKVQRFQN 459 466778899*************************************987655 PP

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence
MKVQRPCPRG CEEKVEQDVT CKVACPRQIH GRHAEEIASA ASRCGRLRLC RLSPRVLVVS 60 AVEATSQALQ EGHPMAGMQA RAVLPTAEVG RKPATTEPSR WYDPSMYSHL PSWETPLPPS 120 DEEPEGDELP TFPLGSGSTQ LLSQTVLAGG AASNGHDEHT TLLQQGLGDD DDEGVDLRIG 180 LCSGGGREPS RTFIIDVDPS PRGVQLSGSR HTEQSTLRGG ASVTGGVGPS ASGRQHGSSA 240 ASTDRLISTC PTRHGVAVGS LCIGGTLHST PKTTTPAPPD LRDDGTCRPA VRPAPSVENI 300 TRGVSNMRAH SDGGDDDGGG GDDVDERFGE DVEAGDDGDD IPIRPLGKTG GRGRGRSRGV 360 VRGRSVGRGG RGGVSDDGXK SATYWSPEEQ XQXVXCKREQ EMHLAGLGHN YGRMRTKEWK 420 WXDIAKXMAN AGRPKDAEDC MKKWDNIFQN YKKVQRFQNA SGRPDFFRLS NEERKEHKFK 480 FLMERALYNE IHAGMVCAHT IDLSMDLPLW FVGANIEDRP DDDDMAAHQE STVICVAYAF 540 RAAVQMGALI DGDFISHEHL CRVADCFRLL LAACMWIMHM AGDDPRSHYE AYYFADLVAK 600 PTLVAAMHRS FDLRRSVVRA SKVVTERLGK AKATFGQHPD YIPHWAPCSI GFRHDASITG 660 PEDAKKLDWL GSAPPVMTTT TTGKMTRRGV VGGGWGGVAG ACASGWSSWA SLGLHHCKVR 720 TCLVCRR

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence

MKVQRPCPRG CEEKVEQDVT CKVACPRQIH GRHAEEIASA ASRCGRLRLC RLSPRVLVVS  60
AVEATSQALQ EGHPMAGMQA RAVLPTAEVG RKPATTEPSR WYDPSMYSHL PSWETPLPPS  120
DEEPEGDELP TFPLGSGSTQ LLSQTVLAGG AASNGHDEHT TLLQQGLGDD DDEGVDLRIG  180
LCSGGGREPS RTFIIDVDPS PRGVQLSGSR HTEQSTLRGG ASVTGGVGPS ASGRQHGSSA  240
ASTDRLISTC PTRHGVAVGS LCIGGTLHST PKTTTPAPPD LRDDGTCRPA VRPAPSVENI  300
TRGVSNMRAH SDGGDDDGGG GDDVDERFGE DVEAGDDGDD IPIRPLGKTG GRGRGRSRGV  360
VRGRSVGRGG RGGVSDDGXK SATYWSPEEQ XQXVXCKREQ EMHLAGLGHN YGRMRTKEWK  420
WXDIAKXMAN AGRPKDAEDC MKKWDNIFQN YKKVQRFQNA SGRPDFFRLS NEERKEHKFK  480
FLMERALYNE IHAGMVCAHT IDLSMDLPLW FVGANIEDRP DDDDMAAHQE STVICVAYAF  540
RAAVQMGALI DGDFISHEHL CRVADCFRLL LAACMWIMHM AGDDPRSHYE AYYFADLVAK  600
PTLVAAMHRS FDLRRSVVRA SKVVTERLGK AKATFGQHPD YIPHWAPCSI GFRHDASITG  660
PEDAKKLDWL GSAPPVMTTT TTGKMTRRGV VGGGWGGVAG ACASGWSSWA SLGLHHCKVR  720
TCLVCRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	4e-06	Trihelix family protein