PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG74573.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

MYB

Protein Properties

Length: 1410aa MW: 148258 Da PI: 7.0431

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG74573.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31	6e-10	2	40	9	48
HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 de l +av+ + g++Wk+Ia+ + Rt+ qc +rwqk+l GBG74573.1 2 DETLRRAVQCYKGKNWKRIAEFFA-DRTDVQCLHRWQKVL 40 799*******************.**********986 PP
2	Myb_DNA-binding	63	6e-20	46	92	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+++++v+q+G + W+ Ia+ ++ gR +kqc++rw+++l GBG74573.1 46 KGPWTKEEDERIIQLVNQYGAKKWSVIAQNLP-GRIGKQCRERWHNHL 92 79****************************.***********97 PP
3	Myb_DNA-binding	58.6	1.4e-18	98	142	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r++WT+eEd+ l++a+ ++G++ W+ Ia++++ gRt++++k++w++ GBG74573.1 98 RDAWTEEEDLALIRAHFLYGNK-WAEIAKCLP-GRTDNSIKNHWNST 142 789*****************.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1410 aa Download sequence
MDETLRRAVQ CYKGKNWKRI AEFFADRTDV QCLHRWQKVL NPDLVKGPWT KEEDERIIQL 60 VNQYGAKKWS VIAQNLPGRI GKQCRERWHN HLNPNIKRDA WTEEEDLALI RAHFLYGNKW 120 AEIAKCLPGR TDNSIKNHWN STMKKRVDSG VFNADDPISV ALAATHGHPD ATLVGNPVQM 180 GVAAVSSSSS LGVESSLSSR IQKPVQVLSQ NAGVVGAEAH HPTTSLSMVI GGSGGMQSSS 240 LNRFSAQALC PNQVQKTSCS VQTSATDGVA FGGNCCPGKS DAAVSAGDDS EDAASVDGGL 300 KKPNNVRKEL LPNKVISRPP RPVPVLRPGV KINNDHLSTA TPAPPPPPVP PPPPPPPPVP 360 PPPVPHVSSS ALLPPIPSCC GSAAPASSIA LSAVQIPQAP VPTAMSLTGY LHNGAGTISG 420 MGLPSIPMAI PLPKSLPFSA SSGYPTPSGG PSGSGPLQMS ATIPSMGHSA VPSQSTCFPS 480 GMAPSSIQGP YHTVMTLHPT QGVAQGQHQI MGSHHHHHHH HHHHVVVGPF ASPAGQQGIR 540 ALATSTGTSS DGLGMVAMSM KSGTEFPPRM ASGGQSSMSL GMAHSQGIDS SLGYGMSRIG 600 QLVSVPQPQR AQDNFENGHQ AMTMPAEVAV VTSTGAEGPV SRLDVSVSSA MVPVEDQGSG 660 EPSSTGGQND NHEACTDELL RAASEVVTEY KYMNILHSMP DGGCAELGDS NEDVLFYEPP 720 KLNPMDLPFL EYDLSSPTDV SRKAFSPLGV SQMIMPAMCS PLLYGAFSPF AGQSPQSKLR 780 SAAQSFCSTP SILRKRRRKL DVTGGNGEGQ EGNLLLLQYG ESKKGVKAED KQGTADIVEQ 840 TREKEGEGTC GASSVPGQSE SPTTPDASSV SGDLEESTGK PAASVAPTVR PVMVSPSYNY 900 HNRDAMLVKG KDGSFQYRQI TCRTPSKGSS GTGGSGGGAA GGSTGWSNGN GNATVKPGGE 960 GSGQEGSGDA TNGGGNSEGG ARNAGGAVSK AMCMAGALKD CGRQERNVKR PRSFGSEGWA 1020 KAKNAGEDFQ VRKKPDLGVL KNLPSAALSP KVAVLVEQRV NSGTCLGSAA GNENNYTGSP 1080 SGIWKPWPSS DAAKDCATMK EGGANQLIAS GAIGRTSFSE YPNIGLLLEE GNDALGIMRH 1140 LNEHASSAYS EAEDVLARTA RGDPSDRSVV EDGSPGSFKE NQRGRSSSGF SSVSLNDCSS 1200 SYAGWLSPFG GLFSPDVYDI AITPLKHSSA ADDSSNLLQP QPDPFSPSIS WAAFATTAFA 1260 MTMCSGLWAS RNLGNLMETA LSPIDVLCRH SGWLLVKKEQ RESESRKTAI TELRKMAHKG 1320 GRKNGVVGEK DGGWREAKEA ERGRRRAEEE ERRGGEEGEE EEAVRAVGVL HSKSGSGKSV 1380 FCSEDCHCKH EGVALWDMEL DLNCYRCQSV

Sequence ? help Back to Top

Protein Sequence Length: 1410 aa Download sequence

MDETLRRAVQ CYKGKNWKRI AEFFADRTDV QCLHRWQKVL NPDLVKGPWT KEEDERIIQL  60
VNQYGAKKWS VIAQNLPGRI GKQCRERWHN HLNPNIKRDA WTEEEDLALI RAHFLYGNKW  120
AEIAKCLPGR TDNSIKNHWN STMKKRVDSG VFNADDPISV ALAATHGHPD ATLVGNPVQM  180
GVAAVSSSSS LGVESSLSSR IQKPVQVLSQ NAGVVGAEAH HPTTSLSMVI GGSGGMQSSS  240
LNRFSAQALC PNQVQKTSCS VQTSATDGVA FGGNCCPGKS DAAVSAGDDS EDAASVDGGL  300
KKPNNVRKEL LPNKVISRPP RPVPVLRPGV KINNDHLSTA TPAPPPPPVP PPPPPPPPVP  360
PPPVPHVSSS ALLPPIPSCC GSAAPASSIA LSAVQIPQAP VPTAMSLTGY LHNGAGTISG  420
MGLPSIPMAI PLPKSLPFSA SSGYPTPSGG PSGSGPLQMS ATIPSMGHSA VPSQSTCFPS  480
GMAPSSIQGP YHTVMTLHPT QGVAQGQHQI MGSHHHHHHH HHHHVVVGPF ASPAGQQGIR  540
ALATSTGTSS DGLGMVAMSM KSGTEFPPRM ASGGQSSMSL GMAHSQGIDS SLGYGMSRIG  600
QLVSVPQPQR AQDNFENGHQ AMTMPAEVAV VTSTGAEGPV SRLDVSVSSA MVPVEDQGSG  660
EPSSTGGQND NHEACTDELL RAASEVVTEY KYMNILHSMP DGGCAELGDS NEDVLFYEPP  720
KLNPMDLPFL EYDLSSPTDV SRKAFSPLGV SQMIMPAMCS PLLYGAFSPF AGQSPQSKLR  780
SAAQSFCSTP SILRKRRRKL DVTGGNGEGQ EGNLLLLQYG ESKKGVKAED KQGTADIVEQ  840
TREKEGEGTC GASSVPGQSE SPTTPDASSV SGDLEESTGK PAASVAPTVR PVMVSPSYNY  900
HNRDAMLVKG KDGSFQYRQI TCRTPSKGSS GTGGSGGGAA GGSTGWSNGN GNATVKPGGE  960
GSGQEGSGDA TNGGGNSEGG ARNAGGAVSK AMCMAGALKD CGRQERNVKR PRSFGSEGWA  1020
KAKNAGEDFQ VRKKPDLGVL KNLPSAALSP KVAVLVEQRV NSGTCLGSAA GNENNYTGSP  1080
SGIWKPWPSS DAAKDCATMK EGGANQLIAS GAIGRTSFSE YPNIGLLLEE GNDALGIMRH  1140
LNEHASSAYS EAEDVLARTA RGDPSDRSVV EDGSPGSFKE NQRGRSSSGF SSVSLNDCSS  1200
SYAGWLSPFG GLFSPDVYDI AITPLKHSSA ADDSSNLLQP QPDPFSPSIS WAAFATTAFA  1260
MTMCSGLWAS RNLGNLMETA LSPIDVLCRH SGWLLVKKEQ RESESRKTAI TELRKMAHKG  1320
GRKNGVVGEK DGGWREAKEA ERGRRRAEEE ERRGGEEGEE EEAVRAVGVL HSKSGSGKSV  1380
FCSEDCHCKH EGVALWDMEL DLNCYRCQSV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	793	800	LRKRRRKL
2	794	798	RKRRR
3	794	827	RKRRRKLDVTGGNGEGQEGNLLLLQYGESKKGVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	2e-77	MYB family protein