PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GBG74572.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
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Family | MYB | ||||||||
Protein Properties | Length: 1527aa MW: 159581 Da PI: 6.8863 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.9 | 6.5e-10 | 2 | 40 | 9 | 48 |
HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 de l +av+ + g++Wk+Ia+ + Rt+ qc +rwqk+l GBG74572.1 2 DETLRRAVQCYKGKNWKRIAEFFA-DRTDVQCLHRWQKVL 40 799*********************.************986 PP | |||||||
2 | Myb_DNA-binding | 62.9 | 6.6e-20 | 46 | 92 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+++++v+q+G + W+ Ia+ ++ gR +kqc++rw+++l GBG74572.1 46 KGPWTKEEDERIIQLVNQYGAKKWSVIAQNLP-GRIGKQCRERWHNHL 92 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 58.5 | 1.5e-18 | 98 | 142 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r++WT+eEd+ l++a+ ++G++ W+ Ia++++ gRt++++k++w++ GBG74572.1 98 RDAWTEEEDLALIRAHFLYGNK-WAEIAKCLP-GRTDNSIKNHWNST 142 789*******************.*********.***********976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1527 aa Download sequence |
MDETLRRAVQ CYKGKNWKRI AEFFADRTDV QCLHRWQKVL NPDLVKGPWT KEEDERIIQL 60 VNQYGAKKWS VIAQNLPGRI GKQCRERWHN HLNPNIKRDA WTEEEDLALI RAHFLYGNKW 120 AEIAKCLPGR TDNSIKNHWN STMKKRVDSG VFNADDPISV ALAATHGHPD ATLVGNPVQM 180 GVAAVSSSSS LGVESSLSSR IQKPVQVLSQ NAGVVGAEAH HPTTSLSMVI GGSGGMQSSS 240 LNRFSAQALC PNQVQKTSCS VQTSATDGVA FGGNCCPGKS DAAVSAGDDS EDAASVDGGL 300 KKPNNVRKEL LPNKVISRPP RPVPVLRPGV KINNDHLSTA TPAPPPPPVP PPPPPPPPVP 360 PPPVPHVSSS ALLPPIPSCC GSAAPASSIA LSAVQIPQAP VPTAMSLTGY LHNGAGTISG 420 MGLPSIPMAI PLPKSLPFSA SSGYPTPSGG PSGSGPLQMS ATIPSMGHSA VPSQSTCFPS 480 GMAPSSIQGP YHTVMTLHPT QGVAQGQHQI MGSHHHHHHH HHHHVVVGPF ASPAGQQGIR 540 ALATSTGTSS DGLGMVAMSM KSGTEFPPRM ASGGQSSMSL GMAHSQGIDS SLGYGMSRIG 600 QLVSVPQPQR AQDNFENGHQ AMTMPAEVAV VTSTGAEGPV SRLDVSVSSA MVPVEDQGSG 660 EPSSTGGQND NHEACTDELL RAASEVVTEY KYMNILHSMP DGGCAELGDS NEDVLFYEPP 720 KLNPMDLPFL EYDLSSPTDV SRKAFSPLGV SQMIMPAMCS PLLYGAFSPF AGQSPQSKLR 780 SAAQSFCSTP SILRKRRRKL DVTGGNGEGQ EGNLLLLQYG ESKKGVKAED KQGTADIVEQ 840 TREKEGEGTC GASSVPGQSE SPTTPDASSV SGDLEESTGK PAASVAPTVR PVMVSPSYNY 900 HNRDAMLVKG KDGSFQYRQI TCRTPSKGSS GTGGSGGGAA GGSTGWSNGN GNATVKPGGE 960 GSGQEGSGDA TNGGGNSEGG ARNAGGAVSK AMCMAGALKD CGRQERNVKR PRSFGSEGWA 1020 KAKNAGEDFQ VRKKPDLGVL KNLPSAALSP KVAVLVEQRV NSQTVLPEVL LRGTTAALQT 1080 DPPAGTGCAG ASGGILTGPS AGVPCLSTVG AGPRVSKVVS PATVSSTAMQ RVGGTGVADG 1140 NSSETEGCRM PGNEWVYCAV TDAPITCSPT GNPPDIVASG TCLGSAAGNE NNYTGSPSGI 1200 WKPWPSSDAA KDCATMKEGG ANQLIASGAI GRTSFSEYPN IGLLLEEGND ALGIMRHLNE 1260 HASSAYSEAE DVLARTARGD PSDRSVVEDG SPGSFKENQR GRSSSGFSSV SLNDCSSSYA 1320 GWLSPFGGLF SPDVYDIAIT PLKHSSAADD SSNLLQPQPD PFSPSISWAA FATTAFAMTM 1380 CSGLWASRNL GNLMETALSP IDVLCRHSGW LLVKKEQRES ESRKTAITEL RKMAHKGGRK 1440 NGVVGEKDGG WREAKEAERG RRRAEEEERR GGEEGEEEEA VRAVGVLHSK SGSGKSVFCS 1500 EDCHCKHEGV ALWDMELDLN CYRCQSV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 793 | 800 | LRKRRRKL |
2 | 794 | 798 | RKRRR |
3 | 794 | 827 | RKRRRKLDVTGGNGEGQEGNLLLLQYGESKKGVK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 2e-77 | MYB family protein |