PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG74363.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

C3H

Protein Properties

Length: 1602aa MW: 166722 Da PI: 8.4006

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG74363.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.8	8e-08	8	29	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr++a++G C G++C+FaH GBG74363.1 8 TCRYWAASGKCFLGEQCNFAHN 29 7********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 1602 aa Download sequence
MSSFSNVTCR YWAASGKCFL GEQCNFAHNL EEKGDGGKTV PKKEKACKEL LLTGYCKDEN 60 NGCEFNHDIV GVTRSGPPPA PAVSASSPSN KLSTSRAASS SGGGGGGGVG VWAPASAANR 120 KVLLPISAPV FVPAAVAAAQ RAALNAWGGI TVPGVAKAPV SSAPLSGARS GGIAAGGGDT 180 ATTTTSASTS GSSASAAPVA STSATTLSGS AGSSSPAAAA RASVSDPSVI SSQVPRSSGT 240 LASAPSSGSL SVRVVDSGAT PSSAALSGPT PPPPPPPPQL LSSVGGLLGG LVQMGGGGGG 300 GGGSEVTSAV GGGGSIAANA NAPPFIPSGI ASVNMAGRSL SVAATVCPSM GLQSLASSVG 360 PSTVTASLAN AAPFVPKKSL QLGAIGRGSG GGILSGTGGG IGMMSQGLQG IQSAVTTALT 420 QQIQLCQQQG AASAQRGQQR PQQAQRMGGG EGQQAQQAQP QQQQQQVAGM RPGVAGAAAA 480 AAAALRSSGG GGSYLLGTDQ IAMMVPYRLP EGDDPALGMT AMSPPGARTE FGMVQGATSG 540 PGGVGGGNGG MQVIGGLGGD GSLIPGVLGL IGGDKVSHLG MAEARMSNGT LGTGPGGGGI 600 SSPGHGSLSQ IGMQKVLIHQ QQQQQQQQQQ QQSLSHLSGL LGARSPRGQA SIPSLLQQQQ 660 QQQQQQQQQQ QQQQQLQQQL QQFQLQQQKH QQAMQSAQGS HLSAQQLQLQ LQQVAATTQQ 720 PLLTSQQMLL QGQQQVIGPR AHTSPRISPC PSPAPIGKQT VAQTQQQSSP GQQQGVLPQQ 780 QSPGQVGVIG GAGDGSMSPR VDSGSVGDVG PSGGGSLPAS RDLGNGIPSL LVRGGSGAGV 840 SNDGTGGVNL CSSSGSIAHP RSPQQQSPGN EKHDLSGRTA ELRGDEACQK PSPQQKQQEQ 900 QLDHQQEQHQ KMILDMHTQH TQQAPGNSQQ QLKQHLQQQQ QQQQSQQQQQ QQSVHHHQNQ 960 QQQLLQQQQH QHLLQQQKQH HHQQQLFQQQ QTQLLQQQLQ LQLQQQRQKT PPLQMQRAQQ 1020 QISPQVSAQQ AGSLYSVRPV SPGPGLGVAA AHGGPTYFFS GPSSSHGGTV HPGLQPAASA 1080 HHHHQHGASG HHHGGGGGFV HMGNYMGGGG TGPIAAPGSR PDGRGARGAF LPPGTTQLAS 1140 RFMPESLREE LRHKSALVQA QMDPEQDIAD LPEMVQRFHS LYPLEDMTRE EEAPSSSFGV 1200 RTMIFKGISA TDGVAYAIRR IDPRQVIPAP ELVVAAQESA DRWAPLAGHP HLVALRESFV 1260 SREVDDAAAL FFVHDYYPAA VTLESVHISD GPNRSMGHPA ARISEEQLWS YAMQIATLLR 1320 AVHSAGLALR PGGLDPSKVL LTSRGRLRVG SIGILDMLNG DPNDDPRLLQ REDLAGFGRL 1380 LLALACGSIG NASLEVMVAQ YSADIVRLTQ ALIASTPENT EGGGLTSARQ LSAILSERMF 1440 GELEHLYTFN DLLMEELRKE AENGHLFRIL VKMGMINERP ENDTDPGWSE TGDRYLLKLF 1500 RDFVFHQVTE ERRPMLDWGH VIEALNKLDA GVSEKLILMS RDEKSMLIAS YRDVKQCLEG 1560 AYRELLSRVS GDKPRPMPHN LMSVVQPSLG HMPRLPTQRQ GP

Sequence ? help Back to Top

Protein Sequence Length: 1602 aa Download sequence

MSSFSNVTCR YWAASGKCFL GEQCNFAHNL EEKGDGGKTV PKKEKACKEL LLTGYCKDEN  60
NGCEFNHDIV GVTRSGPPPA PAVSASSPSN KLSTSRAASS SGGGGGGGVG VWAPASAANR  120
KVLLPISAPV FVPAAVAAAQ RAALNAWGGI TVPGVAKAPV SSAPLSGARS GGIAAGGGDT  180
ATTTTSASTS GSSASAAPVA STSATTLSGS AGSSSPAAAA RASVSDPSVI SSQVPRSSGT  240
LASAPSSGSL SVRVVDSGAT PSSAALSGPT PPPPPPPPQL LSSVGGLLGG LVQMGGGGGG  300
GGGSEVTSAV GGGGSIAANA NAPPFIPSGI ASVNMAGRSL SVAATVCPSM GLQSLASSVG  360
PSTVTASLAN AAPFVPKKSL QLGAIGRGSG GGILSGTGGG IGMMSQGLQG IQSAVTTALT  420
QQIQLCQQQG AASAQRGQQR PQQAQRMGGG EGQQAQQAQP QQQQQQVAGM RPGVAGAAAA  480
AAAALRSSGG GGSYLLGTDQ IAMMVPYRLP EGDDPALGMT AMSPPGARTE FGMVQGATSG  540
PGGVGGGNGG MQVIGGLGGD GSLIPGVLGL IGGDKVSHLG MAEARMSNGT LGTGPGGGGI  600
SSPGHGSLSQ IGMQKVLIHQ QQQQQQQQQQ QQSLSHLSGL LGARSPRGQA SIPSLLQQQQ  660
QQQQQQQQQQ QQQQQLQQQL QQFQLQQQKH QQAMQSAQGS HLSAQQLQLQ LQQVAATTQQ  720
PLLTSQQMLL QGQQQVIGPR AHTSPRISPC PSPAPIGKQT VAQTQQQSSP GQQQGVLPQQ  780
QSPGQVGVIG GAGDGSMSPR VDSGSVGDVG PSGGGSLPAS RDLGNGIPSL LVRGGSGAGV  840
SNDGTGGVNL CSSSGSIAHP RSPQQQSPGN EKHDLSGRTA ELRGDEACQK PSPQQKQQEQ  900
QLDHQQEQHQ KMILDMHTQH TQQAPGNSQQ QLKQHLQQQQ QQQQSQQQQQ QQSVHHHQNQ  960
QQQLLQQQQH QHLLQQQKQH HHQQQLFQQQ QTQLLQQQLQ LQLQQQRQKT PPLQMQRAQQ  1020
QISPQVSAQQ AGSLYSVRPV SPGPGLGVAA AHGGPTYFFS GPSSSHGGTV HPGLQPAASA  1080
HHHHQHGASG HHHGGGGGFV HMGNYMGGGG TGPIAAPGSR PDGRGARGAF LPPGTTQLAS  1140
RFMPESLREE LRHKSALVQA QMDPEQDIAD LPEMVQRFHS LYPLEDMTRE EEAPSSSFGV  1200
RTMIFKGISA TDGVAYAIRR IDPRQVIPAP ELVVAAQESA DRWAPLAGHP HLVALRESFV  1260
SREVDDAAAL FFVHDYYPAA VTLESVHISD GPNRSMGHPA ARISEEQLWS YAMQIATLLR  1320
AVHSAGLALR PGGLDPSKVL LTSRGRLRVG SIGILDMLNG DPNDDPRLLQ REDLAGFGRL  1380
LLALACGSIG NASLEVMVAQ YSADIVRLTQ ALIASTPENT EGGGLTSARQ LSAILSERMF  1440
GELEHLYTFN DLLMEELRKE AENGHLFRIL VKMGMINERP ENDTDPGWSE TGDRYLLKLF  1500
RDFVFHQVTE ERRPMLDWGH VIEALNKLDA GVSEKLILMS RDEKSMLIAS YRDVKQCLEG  1560
AYRELLSRVS GDKPRPMPHN LMSVVQPSLG HMPRLPTQRQ GP