PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GBG73989.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
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Family | HB-other | ||||||||
Protein Properties | Length: 5558aa MW: 590547 Da PI: 5.4577 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53 | 6e-17 | 3165 | 3216 | 6 | 57 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ q e+Le+++++++yp+ + r+eLA++lgL+e+q ++WF rR k++k GBG73989.1 3165 MKTPAQKEVLERYYAEDKYPTDTVRAELATQLGLSEKQLQMWFSHRRRKDRK 3216 6799**********************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 5558 aa Download sequence |
MVWFGAPEVP DHGMVWSPRG AGPLDGPTTQ GRRTVAWSDV PDAPDDWMVR RPRGDEPRPS 60 PRASPCNDPN TEWHVAPDHF PVWYGESGTP DHVAAVADTA ETPDQDLLCP GGSGTPDHAM 120 AGSGLPKPSE LTMAWPGVAE TPDQSMAWSG LRQTTIWHGP DRSVAWSSAP EPPNHATVQF 180 SVIEVADYAT AWSVVPEPPD HAMLRSGVGE VSEHTMARSG APEPADRAVV WSGVVEAADH 240 TSPEPVNRNM QWSGGAEAPD HTTAWSGVPE PPDHGTPRTG VVEAPEHTMA CHGLASLRRQ 300 SIPWHGLESR SRRTMPCYGL ASWRRRTIPV PEHTVAWPGV PTATKHAIAW SVVLTATKGK 360 QRRSLWDSGS KGDFIHPRVV KEARLPRTGS PSPISVTLGD DKTQRFFDQT VTDLPFFLTL 420 EQTDRSPASR RHCSSAHIDV METRYDFILG TPWSRRFRST EADWATNTLV LKTKCGQTYR 480 VPFIGTTATP RPDPPPPEPS VPTPSPSITV TSPRQFAHFI RQDDVTFFMV NVTDLLHYDP 540 PCPDAELLPL EPDPPSISMT LISTFVPPPS VESTLPSRAD ADAEELAQYT ADLELAIRDL 600 IREYHDVFPS SFSLSIPEAT ELKRQLEELL RLGFIKPSNS PWGAPVLFAR KADGTLRLCI 660 DYRSLDRYTV KNSYPMPRFD ELFDRLAGNC FFTKIDLCSG YHQIRVAAAD QPKTAFRSHF 720 GHYEFTVMPF GLTNAPATFK RAMNDILRDI LEQYVLVYLD DILVYSRTLE EHLRHLRDIL 780 DRLRRHGFYA KLSKCRFAQH KVDFLGHYVS HQGLHMDDVK ITAIAEWPAP TSAKQLRSFL 840 GLTSYYSGQS DEERKRGKGR GRREGGGGGG GGGGGGGGLG GGGGGLGGGG GGGGLGGEGG 900 EGGVGVRVRV HGTTVVPLSS LRGSGVVKAP DHWMVRCRRS AGPSTRHVVA AADTAHPTVA 960 AAAAVGADAV AAAAGAPVGS HCWCSCCAPV FPPMVRRRRG ARPSDGPASS RRWTIEASVT 1020 AAADAAHPTV AAAAAVGVAA VAAAAGAHPT LLCTSLPSDG LASSRCQTIE VSVTTAVDAA 1080 HPTVAAGAVA EAVGAHPTVA DAAHPVEASV TAVADAAHPT VAAGAAIRVD AVVTAAGAPC 1140 GSHCWCSWCA PVFPPMVRRR RGARPSDGTA SSTHRTIEAL VTAAVDATYP TVAAVAAAAG 1200 AHPTVADAAH PIELSVKAAA DAAHPTVAAA AAVGVDAVGV DAVGASAAAL VGSHCWCSCC 1260 APVFPSMVRR RQGARPSSGP ASSRRRTIDA FGTADADAAV PIAVAATAVG GVPAIVTSKQ 1320 GFEDMAQLLC PCLPTKGPAS SRRQTIGWSG VVDKPDHRGI EFLRLQQLLV LIPLLLMLLI 1380 LSRRRSPQLL ILLIPLSLQL LRLELMRLQQ PLVFLLGLTP SAATVPQSSL RWSGVLKAPD 1440 LRVVRRCRGA GPSTRPTQQM QTRLFPLWLP QLLSVLFLLL LSHLSKGSST WQSCCAPVFP 1500 PRVRRSQAAR PSDGPASSRR RTMAASVTAD GDAAHPTVAA AAAVGVAAVA AAAGAHPIIV 1560 DSAHPIEASV TAVADAAHPT VATAVAVGVD AVAAAAGAPS GSHCSCSCCA PVFPPMVRRR 1620 QGARPSSGPA SSRRLSIDAS GTANADAVVP IAVAAAAVGA VPVVVVTSEQ GLEYMAQLLS 1680 PCLPFEGPVS SRRQTIGWSG VVGALDHRGV AVAVGVAAVA AAVGAHPTVA DVAHPIEASV 1740 TIVVDAAYPT VAAADGAPVG SSDGPVSSTR RTIEVSVTAA AHTAHPTVAA VAVLGVAAVA 1800 AAAGAYPTIV DAAHPIEASV TVAGDAAHPT VPAVAAVGVD AVAATTGAHP TVVDAAHPIE 1860 VSVTAAADAP HPTVAAVAAV GVDTVAAAAG AHPTVDDAAH PIEASVTAAA DAAHPTVNAD 1920 AAVGVDVVAA SAGFEYMAQL LCPCLPSEGP ASPTHRTIEE SVTAVVDAAH PTVAAAAAVG 1980 VAAVAAAAGA HPTVADAAHP IKASVTAAAD AAHSTVVAAV VVGVYAVAAA AGVPARSHCW 2040 CSCCASLFPP MVRRRQGARP SGGPASSRRR TIDASGTADA DAAVPTAVAA AAVGVVPAVA 2100 VTSEQGFEYM AQLPLSSLRG SGVVKAPDHR MVRGPAAVGV AEVAATVGAH PTVVDAAHPI 2160 EASVTAVVDA AHPTVVAVGV DAVAAAAVAH PIVADAAHPI EESVTTAVDA THPTVVGAVA 2220 VGVDAVAAAA GALIGSHCWC SSCAPIFPPM VWRRQGARPS DGPASSRRRT IDTCHRADVD 2280 AVVPTMVAAA AVGAVPSVVV TSELQHPRCI NAPFDKSKKK DASQMVMLRP FEFLKRVNCY 2340 KVSNHIMTID NNLQLSTPFV PFDCDLGDFA DMVRRHKLQE MGQAVLRTTV SVNWPKAVGK 2400 SCGEPKTSAR MSKSGAASTQ AKSVSKSASL LQPKGVSATR APSHAECVAR VSLTSTGGAT 2460 DHEDDDENTE EDSHFRQWDG GRWPDGNDAK DTEGDDVEQR FRDDAHDEEG SLEDGLAEGD 2520 GSEGQEDGGH EGHGSEEEEN EDASDEDAAK REDSYGGGSE GDEGGADDDD GGNDGSQKRR 2580 EQSSRATSHD GPAEDDDVLH GTQSGGSTRL VAAKSSAAHK WGVHSWKARV VYFDDDHLEG 2640 YAYISTFDNT RETRAIPLLF RMVVTAIRGL WQSMKEPKDD WHQAKTVEER TAQRDQYQEF 2700 VWKVIRMTPD TSLRKRSLAK RFVRNWSNLL RPYMCLAASG RVVWNLVEKF FDKWEKGELP 2760 GQDGVRPVDQ EGKAGEAAGP GPAAKTVKGK KVLVHYLQSN KNSSGFYICI NDPPASAWKV 2820 FGDFTSREKE MALEKILARH IVVTSRRAFV KKQMNMQDLY VEEETEDEEI DLLLSGAHHN 2880 AMREETPSLS TLGGQQAMKE DVGGTVESTR TENVMRGTTP NTGGAREGST SKCGMKEATP 2940 GFVSLVRRVR NDIEGAADGE TQNVVHADKE SEDGPDGMDI EDDPLFHIPD DVSKQLAPGD 3000 NISYAMKEMK AGPHFLDIKY KESHEHEWGH HIAQGTDEAI RERSVHEKEG GNGLVHMECT 3060 GPGTQIVSES TMAEMRADLE GVSTAEHKKV PSTGNRERGE ENEKEEEAIK SRSVINLVDQ 3120 SGYGTVSSSW RRGERGVIPK TLGQGGGRGG GAGVRETGRV HKKMMKTPAQ KEVLERYYAE 3180 DKYPTDTVRA ELATQLGLSE KQLQMWFSHR RRKDRKEECR DDLPMGPTIG VPSRPTSGNF 3240 NCSRPSHPSH TTYANQPQQQ HQIPIQQQQL PPSAAAQQQQ QQQQHYPRQH NHCGGVAPLP 3300 PPLPPTPAAP SLSPFSTHRS PLRASPVGED YPSLVLGSEA RESNLPPPSN NYLAEYEEEA 3360 LEMDPSAGRG RRGAGGGGGG GGGGGGSGGV GNAVMPPPVT PPAAARPRLS SMPRRVSGVA 3420 GIGIGGGGIS AGAGAGVGVG VGVSGVGVGV GAVVGGVGGG SVGGGAGGGA VVGKVGGSLK 3480 RRTSSQQQQP QQMLTDNQQD QAMAGPSPLA RDLEDGAARV AAERAAIAAV EAQMPEPLRP 3540 DGPPLAVEFD PLPLGAFSFI SASGAAASAL GPAISSDSKK RKVLSKKPEG LPNEDHDPRE 3600 RKDAKPAAAV KGVAQALPNN KVVSPVPPLA NSTAPPPAPP LKKVPLSQPP GRGVGGMGPS 3660 LGKALVRTTH QTPSGSLVAP GKGSGLSSLT PPSPSMPPPP LAPPSLPPPP PHLPPSSAHP 3720 STYGSDFVHD PASADQGFPN VAMEHGGYYN SSGYGPGPDH PYSHGAADMQ LSRSPHLREA 3780 QGEEYMSPSS QDLYNGQYRT VQGALHRAGP PGQYGVGGGG ARQLPLPQAS GGTPPGHGLG 3840 VGGVGLGGVD MQGVGAGGRP VGVGRMRGVG VAIGGGAGGG MASMVLGRGR GGGRGRGGRG 3900 GGRGGYGDEG TEDGIISARE MMPVGLSPTH STVALTTVPM GGQAGAAGIQ IDDAAIAAMS 3960 HQAAMEAHAK RQAAAAEKLR QMELQEQIRL ERKRKLEEQR LLKEEEAREK RAKRELDRAV 4020 IARRKLEEQA RREEERLERE KKREQERIVR ERLKEEERVE RERRRELERL EREKQKEVVR 4080 VEKEKKKEEL RLQREEAKVR LAKEKALAKK AAREAADLVE DDYLERQEAA RARGLPYGDD 4140 ADLDNVVLPE RFPPDCVLMK QPLALPPWDE SQELVGHLFM CWSFVTTFAD VLGIWPFTLD 4200 ELAEALHDHD SRLLGEVHLA LLKTICSDLE EAARSAAASV PGGAGVVSTT AAVGHPVLEE 4260 IQAWGFNLTT WHLRLNALTW PEVLRQYALA AGFGPKRKKP APRCEVLDGD EESDGEDALG 4320 LLRSGAAVRA AAQHVLGRKA RMLQAQRRLP GRLTPGTVKY AAYQVLSVVG QEGLTVPDIA 4380 ERIQNSGLRD LRTSRTPEAT IAGALSRDPI FVKVAPSRYC VKACFRRADE DVEKGEDIVK 4440 GEGEGYGDDY EEGDDEGDAE TEVDGDEDGS EDGDVVDEDD GGEERDGSVD YRKMRNNRSL 4500 YMGSLKTAEQ EREVIGNEDA ELEHREFERP GRRLCEEETA ERLTHDEGDL EDELTREGSL 4560 QRNRAEQGRT DECEEAENNR DSVGEGCEVD ETDLGEPWVQ ALMEGEYSEL SVEERMNALL 4620 ALVNAVNEGS LLRSALEDRH EAAAALRRQM WAEGQAERRR QKEAQYAKLQ AIASGERPGT 4680 PGADSDGGGR PMAKGGGGSG DEAAHADDYM HGSGVADTGH GPFEKARARM RADIVERADE 4740 AYAIRMRPLG RDRRFNRYFR LVPCGAGECD KGWGRIFYES FKDSHWKVID TEEAFDALLR 4800 SLDTRGMREA ALHRALLRHE SKIRQAMRNE YGGKTTGAGR GKGGAVVVIK KEDREEEDPR 4860 EKCGGEQEGV GEGWKSGAVK IPPAHEVDRR CAWEKFEELE RWMSDVRTRA SAVLAADEIP 4920 RDAKGVAPDR GTRCDYCQEL VRVKEDRHCP HCHQTFDRAM MPRMLPKVFA EHLRDCEHRM 4980 KTGDPSWVQL GPPFRPPPQL QKLKAELMDV EAAIPVEAVD LNWYKHDRPS WAVQLKRAAT 5040 PKELLQVLAE LENVVQRDWL SDDFKPTWEV LCDINQTQKH DGSVWANDIS AKAGPDVAIL 5100 PWIPHTSSAV ALRIWSFDAA LLYRKDDCLP GMEHEQEAED RGKTANEVEV KRVETKKSKP 5160 ASASGRGAPR TAPMASGGAH HTGASGGGSG RGGGAGGRGG RGGRGGGGGR WRRQGGRGAQ 5220 GGRGGEGIAR GGRGTGRVEE GTRASGRGRG RGGRGGGRGR GGWRRGGRKK AEDGHRIIAT 5280 AYRRDTTRVL GRQGHANHRQ VDPRLRAGNL RSELHRSGDQ SDEEEEADRL DAGGESPDYD 5340 RANDGQDVGE ASEEQQVDDD ERDGEEEEGD DEEEDEEDVL VGHDDLDDEA GSADEDDNEE 5400 DREGGMDDED REDDDDLEEG EEGSEREEEE EEEEMEEEEE EEEEEVDGLE DEGEDHHGMD 5460 EGYGEIGKHE YMEGPEEEED YDENEEDHVG REMADPLEHD EEDDMDDEME DELDGDNIEV 5520 AGGHSGHRNG EYPSPGDRSE GTPSIGDDYE DDDEFDDR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3210 | 3217 | RRRKDRKE |
2 | 3579 | 3605 | KKRKVLSKKPEGLPNEDHDPRERKDAK |
3 | 3894 | 3904 | RGRGGRGGGRG |
4 | 3896 | 3906 | RGRGGRGGGRG |
5 | 5199 | 5207 | GGRGGRGGG |
6 | 5201 | 5210 | RGGRGGGGGR |
7 | 5202 | 5210 | GGRGGRGGG |
8 | 5243 | 5253 | RGRGGRGGGRG |
9 | 5249 | 5259 | RGRGGRGGGRG |
10 | 5251 | 5261 | RGRGGRGGGRG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44180.2 | 3e-74 | HB-other family protein |