PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG73949.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

ARF

Protein Properties

Length: 1000aa MW: 103138 Da PI: 6.8953

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG73949.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.7	2.2e-23	368	469	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f k+lt+sd+++ g +++p+ +ae++ +++++ + tl+ +d +g++W++++iyr++++r++lt+GW+ Fv+a++L +gD +vF + + ++ l+ GBG73949.1 368 FAKTLTQSDANNGGGFSVPRYCAETIfpaldySLDPPVQ-TLVAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNAKKLVAGDAIVFLR--SASGDLC 463 89***************************96666654.9*********************************************4..467888 PP EEEE-S CS B3 94 vkvfrk 99 v+v+r+ GBG73949.1 464 VGVRRA 469 ***986 PP
2	Auxin_resp	97.9	1.4e-32	542	625	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a+ a++++vFev Y+Prast+eF+vk + v++a+ +++ vGmRfkmafetedss++++ +Gt+ +d+d Wp+S+Wr+L+ GBG73949.1 542 AVALAAQGKVFEVAYYPRASTAEFCVKEQLVQNAVMQSWQVGMRFKMAFETEDSSRISWfMGTICRKEDADRDMWPGSPWRCLQ 625 567899*****************************************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 1000 aa Download sequence
MMIQLEELTG LSSRVTGGNG GGGVVVGGGG GGGGGGQSGS PTNIHGGGGS SXCTDTDERR 60 DVLSSVGGGA GAGCDDRPEG ATSHHESSAE GQLCLNSLSA DERRSSVITT ATCPASVACP 120 SSCPNSVAGL SKSSSISNGN GANTTGNNNS SSSMTKKGGV LDSRLWHACA GGMVQMAGVG 180 TRVVYFPQGH AEQAATQVPF APGQRAAIPC RVVNVDYLAD PETDEVFSKI TLRPETESCN 240 SSSSGILSPT TCSHQQLKAA GNLGLAMGGG GGGGGGGVLG TSGTSGGVGL VGAGASGAGC 300 NGGVGERCAA AGSAGGGGGG GGGGGGCDRG GAPTNSFRSV AASSAAAGAA ADEESSGAVE 360 EQTKPMSFAK TLTQSDANNG GGFSVPRYCA ETIFPALDYS LDPPVQTLVA KDVHGETWKF 420 RHIYRGTPRR HLLTTGWSTF VNAKKLVAGD AIVFLRSASG DLCVGVRRAM REPGSADAAT 480 WHCSYSPRIP RYAIKGGDMY SSAEGVAGAA GMMGMGMVGV GRRGGSSARN RARITADSVL 540 EAVALAAQGK VFEVAYYPRA STAEFCVKEQ LVQNAVMQSW QVGMRFKMAF ETEDSSRISW 600 FMGTICRKED ADRDMWPGSP WRCLQVGWDD PELLQGVGKV SPWQVELVTT VPMPLPSFTA 660 GGPKKKLRTG PGPGGGSCME NGQSFMQLAG SGIAGSSTTS TPTSPSLSDL QRTSSAITVA 720 SSDSRRLSLP SAEEYYSPPR STGAGLVPLL AGPDSLIPVN VSPPQLQPRQ QSQQPILLFG 780 TVIDNVSGLQ SPHGGVVNTR LIEFPPLAKT GTRQQLDLSA ASDLFPILKY INQQQHSDIS 840 RVGTEWTFDS RAGSDSVRMS STFQVGTTAQ GSMMGSGFHH GSDGSWGRDS WRKGSMMGWD 900 TPAIEEHLFC KIFRGGELVG RAVDLGKFSN YDQLCAELSV MYGIDRHELQ KNMAYRDSEG 960 HWVLVGDEPY RHFAGTARKA MIMSTGGDHP AVLMEAGLAR

Sequence ? help Back to Top

Protein Sequence Length: 1000 aa Download sequence

MMIQLEELTG LSSRVTGGNG GGGVVVGGGG GGGGGGQSGS PTNIHGGGGS SXCTDTDERR  60
DVLSSVGGGA GAGCDDRPEG ATSHHESSAE GQLCLNSLSA DERRSSVITT ATCPASVACP  120
SSCPNSVAGL SKSSSISNGN GANTTGNNNS SSSMTKKGGV LDSRLWHACA GGMVQMAGVG  180
TRVVYFPQGH AEQAATQVPF APGQRAAIPC RVVNVDYLAD PETDEVFSKI TLRPETESCN  240
SSSSGILSPT TCSHQQLKAA GNLGLAMGGG GGGGGGGVLG TSGTSGGVGL VGAGASGAGC  300
NGGVGERCAA AGSAGGGGGG GGGGGGCDRG GAPTNSFRSV AASSAAAGAA ADEESSGAVE  360
EQTKPMSFAK TLTQSDANNG GGFSVPRYCA ETIFPALDYS LDPPVQTLVA KDVHGETWKF  420
RHIYRGTPRR HLLTTGWSTF VNAKKLVAGD AIVFLRSASG DLCVGVRRAM REPGSADAAT  480
WHCSYSPRIP RYAIKGGDMY SSAEGVAGAA GMMGMGMVGV GRRGGSSARN RARITADSVL  540
EAVALAAQGK VFEVAYYPRA STAEFCVKEQ LVQNAVMQSW QVGMRFKMAF ETEDSSRISW  600
FMGTICRKED ADRDMWPGSP WRCLQVGWDD PELLQGVGKV SPWQVELVTT VPMPLPSFTA  660
GGPKKKLRTG PGPGGGSCME NGQSFMQLAG SGIAGSSTTS TPTSPSLSDL QRTSSAITVA  720
SSDSRRLSLP SAEEYYSPPR STGAGLVPLL AGPDSLIPVN VSPPQLQPRQ QSQQPILLFG  780
TVIDNVSGLQ SPHGGVVNTR LIEFPPLAKT GTRQQLDLSA ASDLFPILKY INQQQHSDIS  840
RVGTEWTFDS RAGSDSVRMS STFQVGTTAQ GSMMGSGFHH GSDGSWGRDS WRKGSMMGWD  900
TPAIEEHLFC KIFRGGELVG RAVDLGKFSN YDQLCAELSV MYGIDRHELQ KNMAYRDSEG  960
HWVLVGDEPY RHFAGTARKA MIMSTGGDHP AVLMEAGLAR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	663	669	PKKKLRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	1e-106	ARF family protein