PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG73574.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

C3H

Protein Properties

Length: 1217aa MW: 133076 Da PI: 7.2809

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG73574.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.6	3.2e-06	77	98	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C ffa+ G C Gd+C+F H GBG73574.1 77 TPCIFFAQ-GACMKGDKCPFLHL 98 69****.***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 1217 aa Download sequence
MDEAAIKKQT DCLYYIASPL ACTKGDKCEF RHSDYARLNP TECRYWLTTG CTRINCPFRH 60 PPLDGRSVPS LPNRAQTPCI FFAQGACMKG DKCPFLHLPL GPAETEKQQQ QPAFQLSSQP 120 QQQQPTFQIS SQPQQQQPTF QISSQPQQQQ PTFQVSSQPQ QQQEKLQHSP SWQHDQALQQ 180 QFKPSQQEKQ HPLAGKQQQQ QQHPVPQRQQ QLEQQQQQQQ RPRHFQPEQK SQQHARAVVG 240 TQSGPAPLSK NVHHQVYMTN QQSASVNDVL GPSKRARVPQ VSTAVGTDDV LDERQHQERV 300 GRRPQDGGAV ECQQQQQHEY YHQQKQAYQQ QGSSRTESAR TPMARQQRTW GLNQSPREEG 360 EVGFEDSDSM HARPARSTRP TSSRIEVYVP PKGRRWVVDE AVDDEHHTSS PRLPAGEHSR 420 NAVSQQRSAG NLPRGKESSV SRQSSRPGEK LRSAVSSESL QRDVNGPRSL YGKRRSGSEL 480 TEYELSKEEL NCITGRESRT REGNLERGRG AVGQKYEQGH QRWPLKVNGP RVDDAPRSVD 540 GVGGLEGGPS RVAHKHISHS KRHVDSVVCR EHVSSTSLAF HVLQGKMNPS GPVKGDEVIS 600 GIGGHRGASS GRAYDEGQAT EKEAGADLQG YSRQSRDRPA AGVDVSLDNQ LESRGGRHRD 660 TGLRVGGRAI GVDSSTWDGG QITVQAHLQG GAGNRRVGMT GVRTSSPALG RVQQQPERRQ 720 EQEHVQVHKT TEPLGRTTDI RSSQTNARMS GRGDAPLPPA PVRRVFNGVG VAVGPVSSDL 780 SVGRGGPPVP GGFRGGRDEG WNPNGATHGG AGAGMGVRFG GLIGPPLQLL GRGRDMESER 840 LQRMAGAIVH DGGAIGRGSI LGGHFNVNVV MPHLLPPANT MPSPQPPAAV GRGIGTPEQA 900 ANFDAPKSLA QILAQKHAKK AEQLGANAKQ QSNDASKTGK PKLVLRRQPI LDSGIPSSAP 960 AAVSASEERE KPELSQLPAA PQGSRPVKLK RTRDAEQLRN DKAEQSPQSM APVTQRRKVL 1020 KRPVIGPAAD GGAVSSNAPD NSVMADEDKA HMEDSAEELP EDRKHILEEE GNGILEEEND 1080 DSRELKEKLG REKRLFGDEK QRDVDAGGEK RLLDEEEHRD SEVYVTSDHS DMQEMVDYGS 1140 GLQISMNDGS EVESKEGLLS EMHEDDRTGG DLPRGDPAEA DLAQDAGIDG TKEPGFMETD 1200 DGEEEDEFAK QLGGLFS

Sequence ? help Back to Top

Protein Sequence Length: 1217 aa Download sequence

MDEAAIKKQT DCLYYIASPL ACTKGDKCEF RHSDYARLNP TECRYWLTTG CTRINCPFRH  60
PPLDGRSVPS LPNRAQTPCI FFAQGACMKG DKCPFLHLPL GPAETEKQQQ QPAFQLSSQP  120
QQQQPTFQIS SQPQQQQPTF QISSQPQQQQ PTFQVSSQPQ QQQEKLQHSP SWQHDQALQQ  180
QFKPSQQEKQ HPLAGKQQQQ QQHPVPQRQQ QLEQQQQQQQ RPRHFQPEQK SQQHARAVVG  240
TQSGPAPLSK NVHHQVYMTN QQSASVNDVL GPSKRARVPQ VSTAVGTDDV LDERQHQERV  300
GRRPQDGGAV ECQQQQQHEY YHQQKQAYQQ QGSSRTESAR TPMARQQRTW GLNQSPREEG  360
EVGFEDSDSM HARPARSTRP TSSRIEVYVP PKGRRWVVDE AVDDEHHTSS PRLPAGEHSR  420
NAVSQQRSAG NLPRGKESSV SRQSSRPGEK LRSAVSSESL QRDVNGPRSL YGKRRSGSEL  480
TEYELSKEEL NCITGRESRT REGNLERGRG AVGQKYEQGH QRWPLKVNGP RVDDAPRSVD  540
GVGGLEGGPS RVAHKHISHS KRHVDSVVCR EHVSSTSLAF HVLQGKMNPS GPVKGDEVIS  600
GIGGHRGASS GRAYDEGQAT EKEAGADLQG YSRQSRDRPA AGVDVSLDNQ LESRGGRHRD  660
TGLRVGGRAI GVDSSTWDGG QITVQAHLQG GAGNRRVGMT GVRTSSPALG RVQQQPERRQ  720
EQEHVQVHKT TEPLGRTTDI RSSQTNARMS GRGDAPLPPA PVRRVFNGVG VAVGPVSSDL  780
SVGRGGPPVP GGFRGGRDEG WNPNGATHGG AGAGMGVRFG GLIGPPLQLL GRGRDMESER  840
LQRMAGAIVH DGGAIGRGSI LGGHFNVNVV MPHLLPPANT MPSPQPPAAV GRGIGTPEQA  900
ANFDAPKSLA QILAQKHAKK AEQLGANAKQ QSNDASKTGK PKLVLRRQPI LDSGIPSSAP  960
AAVSASEERE KPELSQLPAA PQGSRPVKLK RTRDAEQLRN DKAEQSPQSM APVTQRRKVL  1020
KRPVIGPAAD GGAVSSNAPD NSVMADEDKA HMEDSAEELP EDRKHILEEE GNGILEEEND  1080
DSRELKEKLG REKRLFGDEK QRDVDAGGEK RLLDEEEHRD SEVYVTSDHS DMQEMVDYGS  1140
GLQISMNDGS EVESKEGLLS EMHEDDRTGG DLPRGDPAEA DLAQDAGIDG TKEPGFMETD  1200
DGEEEDEFAK QLGGLFS