PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG72772.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

C2H2

Protein Properties

Length: 1276aa MW: 129981 Da PI: 7.8848

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG72772.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.1e-05	309	331	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H GBG72772.1 309 FVCEICNKGFQRDQNLQLHRRGH 331 89******************988 PP
2	zf-C2H2	15.7	4.1e-05	385	407	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s+ k H++t+ GBG72772.1 385 FECDKCSKKYAVQSDWKAHMKTC 407 89*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 1276 aa Download sequence
MHAKGSTPVC NREMVLGGGG SFVGGGGHTS VPPHLHGNSV CAPQDGRAAY SPPPQSSECL 60 TLNGCYGSGF KMMRSCSEAL CLSTSPASPR SFMMEATMMD RNGSGGRSHT TVDTKESSAS 120 STLSPPPEKS VEQNPRSAGG SGKEDCRLIE SMGVMPRSNV NTTSVASGGT TEMTASTNNH 180 DDPGMTLSSK ITSGSLVIGG GGGAGANGMK MSGSSFAGNG VSDSAEGAPA RIAGIGQPGG 240 GGGGSGGSVG LSIGGTSSKM IGGSGIGGGK DAAAAVTGVK RKRSLPGTPD PQAEVVALSP 300 RTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR PNKECRKRVY VCPEPTCLHH 360 DPARALGDLT GIKKHYCRKH GEKKFECDKC SKKYAVQSDW KAHMKTCGTR EYRCDCGTLF 420 ARRDSFITHR AFCDTLAETA ARVNAHQKSL PAGFHPGQSD LAQLGPNRML PGWLAGDIAL 480 RESRGEAAAA MELLGSGYRD RLGLMPGAHH WSQETASVPS SPQGLSSRLG LWLGQAPQDR 540 AKGHHGGMPL MLPQSLLGVN PGLVNGTVDP GGAPYLGGNV HQGGHKAGAG YGGPLQLEYP 600 QIPPAPRQAA GSLFATLFAS GSAGQIPLPS SHHGNESNGH VAGPAGAGPG GGGAMTASGL 660 LLACQNAHDG MGMPPRTTTG DMLDQNHESQ SPGEPGPHHP RQGGPPPGTV DTYHHRCGDG 720 SSSSTVQQGN SMGTASNGLP ISSGLLTGPL ANTPSAAAMA LVLSAQQHQQ QQQQQQQQQQ 780 QQQQQQQQRQ GENHRHQLPQ HQVMHAHRGP PPQHGQHLLH HTDEQVQYHR QQQAPEQGSA 840 GANGCGAQRG GDHNSGAALM HLQKSMAQRQ LEGSGGLEGN SRSDLRGDLF GENISNSLAA 900 LTAFWGAGSR VSRAMGGGGG GGGGPAAAGG GGGGGGGAEG ATGVTQGAGI GSGTEEGPGA 960 LMQSQIQAML RGFDGGATLN AEGTCSRDSG SSSMDHHVPG SRSGMINTHT LNFDEQGRHG 1020 ESGSGSLHDM INNGPSGSPG PQPLCHSSSM NVYGCVAGSS GGNMAANGLV APMGLYGYGD 1080 PFQGDILLNA GAGGNLRGQG GGPRAGPAGG GERACLQNNS VVCETISQMQ GLGAGMPMSA 1140 AVTTKGQHQQ QMGEPQGDCV RPGRLSNLSL TSLDAERGTM GAVTRDFLGL GGSEKAMSLS 1200 ATELEGLAAL EGNIRGFQNA NGAAANHPTS AVRSVPEGGV GTAQQDALGS AAPAVRHNQF 1260 EGPGQSMGSC SSPHCG

Sequence ? help Back to Top

Protein Sequence Length: 1276 aa Download sequence

MHAKGSTPVC NREMVLGGGG SFVGGGGHTS VPPHLHGNSV CAPQDGRAAY SPPPQSSECL  60
TLNGCYGSGF KMMRSCSEAL CLSTSPASPR SFMMEATMMD RNGSGGRSHT TVDTKESSAS  120
STLSPPPEKS VEQNPRSAGG SGKEDCRLIE SMGVMPRSNV NTTSVASGGT TEMTASTNNH  180
DDPGMTLSSK ITSGSLVIGG GGGAGANGMK MSGSSFAGNG VSDSAEGAPA RIAGIGQPGG  240
GGGGSGGSVG LSIGGTSSKM IGGSGIGGGK DAAAAVTGVK RKRSLPGTPD PQAEVVALSP  300
RTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR PNKECRKRVY VCPEPTCLHH  360
DPARALGDLT GIKKHYCRKH GEKKFECDKC SKKYAVQSDW KAHMKTCGTR EYRCDCGTLF  420
ARRDSFITHR AFCDTLAETA ARVNAHQKSL PAGFHPGQSD LAQLGPNRML PGWLAGDIAL  480
RESRGEAAAA MELLGSGYRD RLGLMPGAHH WSQETASVPS SPQGLSSRLG LWLGQAPQDR  540
AKGHHGGMPL MLPQSLLGVN PGLVNGTVDP GGAPYLGGNV HQGGHKAGAG YGGPLQLEYP  600
QIPPAPRQAA GSLFATLFAS GSAGQIPLPS SHHGNESNGH VAGPAGAGPG GGGAMTASGL  660
LLACQNAHDG MGMPPRTTTG DMLDQNHESQ SPGEPGPHHP RQGGPPPGTV DTYHHRCGDG  720
SSSSTVQQGN SMGTASNGLP ISSGLLTGPL ANTPSAAAMA LVLSAQQHQQ QQQQQQQQQQ  780
QQQQQQQQRQ GENHRHQLPQ HQVMHAHRGP PPQHGQHLLH HTDEQVQYHR QQQAPEQGSA  840
GANGCGAQRG GDHNSGAALM HLQKSMAQRQ LEGSGGLEGN SRSDLRGDLF GENISNSLAA  900
LTAFWGAGSR VSRAMGGGGG GGGGPAAAGG GGGGGGGAEG ATGVTQGAGI GSGTEEGPGA  960
LMQSQIQAML RGFDGGATLN AEGTCSRDSG SSSMDHHVPG SRSGMINTHT LNFDEQGRHG  1020
ESGSGSLHDM INNGPSGSPG PQPLCHSSSM NVYGCVAGSS GGNMAANGLV APMGLYGYGD  1080
PFQGDILLNA GAGGNLRGQG GGPRAGPAGG GERACLQNNS VVCETISQMQ GLGAGMPMSA  1140
AVTTKGQHQQ QMGEPQGDCV RPGRLSNLSL TSLDAERGTM GAVTRDFLGL GGSEKAMSLS  1200
ATELEGLAAL EGNIRGFQNA NGAAANHPTS AVRSVPEGGV GTAQQDALGS AAPAVRHNQF  1260
EGPGQSMGSC SSPHCG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-101	C2H2 family protein