PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GBG71629.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
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Family | C3H | ||||||||
Protein Properties | Length: 488aa MW: 52602 Da PI: 8.7519 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.3 | 6.1e-09 | 1 | 17 | 10 | 26 |
GGTS--TTTTT-SS-SS CS zf-CCCH 10 artGtCkyGdrCkFaHg 26 ++tGtC yGdrC+F H+ GBG71629.1 1 MKTGTCAYGDRCRFYHP 17 89**************8 PP | |||||||
2 | zf-CCCH | 39.9 | 7e-13 | 51 | 77 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++Crf+ +tGtCk+G++CkF H++ GBG71629.1 51 PGQPICRFYVKTGTCKFGASCKFDHPR 77 5789*********************96 PP | |||||||
3 | zf-CCCH | 29.1 | 1.7e-09 | 129 | 154 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C +++rt +C+yG +Ck++H+p GBG71629.1 129 GEKECAYYMRTRECRYGQTCKYHHPP 154 7899********************97 PP | |||||||
4 | zf-CCCH | 35.2 | 2e-11 | 386 | 412 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG C+yG +C+F+H++ GBG71629.1 386 PGQPECNYYMRTGDCRYGMTCRFHHPK 412 5789*********************96 PP | |||||||
5 | zf-CCCH | 30.8 | 4.9e-10 | 434 | 460 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ r+G Ck+G +CkF+H++ GBG71629.1 434 PGQPVCNYYNRNGLCKFGHTCKFNHPM 460 5789*********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence |
MKTGTCAYGD RCRFYHPSAN ATTGTGTARG ANLQVPSPVG RAKAAEHPER PGQPICRFYV 60 KTGTCKFGAS CKFDHPRGNT PVVGNPLVPT APQAQQPQQQ QQQQQQQQQQ QQQQRGPVLN 120 ELGYPIRPGE KECAYYMRTR ECRYGQTCKY HHPPSFPAPG PNPVYPGLPI APAPGPFLPV 180 HDPAMQHAWH VRGPYRFPFV GPHPVTTGQI PLFFQPQTPA SGLIYPPPVS WFNPYLQTAA 240 SHPPMIFPQP QSTGNPSQQQ QQQQQQQHTA SSAGGTFFYA QAPVSGTAPA TDQQTQLTQV 300 TSGAGTPAAV RLGTAAAAAY VPPPSGGHSD TTSSLPCESV PSGATALGHC SVPGSQVSGG 360 ACVMLSSPKD QQQQQQQQQN LFPERPGQPE CNYYMRTGDC RYGMTCRFHH PKDRAAPKNV 420 AQCSLSPMGL PLRPGQPVCN YYNRNGLCKF GHTCKFNHPM GGDLDYDPSA SSLVDMPVAP 480 ISPSANQS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.2 | 8e-39 | C3H family protein |