PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG69578.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

C2H2

Protein Properties

Length: 798aa MW: 83609.9 Da PI: 6.6099

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG69578.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.8e-05	435	458	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C Cg++F + krH+r H GBG69578.1 435 HQCDVCGQHFATAAGVKRHQRIkH 458 79*******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 798 aa Download sequence
MAVPRLVGIC PTMGGNEGEV EAHKGMMGGS GGGSGGEEGA LILSRVQEGK KTGGREIAQG 60 GREKGGSSIF PSPPCSGRKR RGLFSRRGSR RGESAEGGGG EAEEGKEIAA GGEWALVNSS 120 GGHERRKTGG RRTAQGAAKE RGRSVAAASS PPLVSVSPGC CRKRGLVSTP PPSHQTRVQP 180 GEKAPMTTSP PQPPGPVGLT GPDAGGGGDS DEEPKRLKLV CMESESGGQG FVSGDDLSIQ 240 SKIGRNHRRM TSENGGSSPA QKIQVKMQAA GAVEAERQAG SEGDAGGDDE SEGEESERKE 300 VCDRPRQEQQ LQSTGLDPEV SRLKRQRSSG MTAMMAVADS NGGGGSGGGP PDAAAVMAAD 360 LPPSPPHVRS KWRERSRRRS TSHASAKDRA AQGVKLEAKR EQEGAREKGR GRKIVGGITG 420 RVALSGQVTL ERFCHQCDVC GQHFATAAGV KRHQRIKHGK QAAEGVTGGR DPAELGAGAA 480 DEGEKAVDPA PGARKRKAGA IAPKELVGQG GGPDGDARRE GSGFGGGAAA QSPWRASATA 540 QARVGRGGGR RRNAVDEVDD VDDVDDVDDV DDVDDVDGRG AISSRALRGV LEAGGPAVVE 600 LSRHCMVWAD AFHKFSAAFR PLSREKLRPE KELKRAEEQI LLSKIAVREA MHELDDLSKQ 660 GAIDKDAFDS DGRIGYESIF CCLCSSPDTD PNNDILLCDG ECDRGFHQRC LDPPLATSDI 720 PPGEEGWLCP TCDCKTECIY LLNTKSGSFL SLASSWEVCS FDQFPSTIEN DSALQCAVRE 780 SLVPIGILSL HHLVLEFS

Sequence ? help Back to Top

Protein Sequence Length: 798 aa Download sequence

MAVPRLVGIC PTMGGNEGEV EAHKGMMGGS GGGSGGEEGA LILSRVQEGK KTGGREIAQG  60
GREKGGSSIF PSPPCSGRKR RGLFSRRGSR RGESAEGGGG EAEEGKEIAA GGEWALVNSS  120
GGHERRKTGG RRTAQGAAKE RGRSVAAASS PPLVSVSPGC CRKRGLVSTP PPSHQTRVQP  180
GEKAPMTTSP PQPPGPVGLT GPDAGGGGDS DEEPKRLKLV CMESESGGQG FVSGDDLSIQ  240
SKIGRNHRRM TSENGGSSPA QKIQVKMQAA GAVEAERQAG SEGDAGGDDE SEGEESERKE  300
VCDRPRQEQQ LQSTGLDPEV SRLKRQRSSG MTAMMAVADS NGGGGSGGGP PDAAAVMAAD  360
LPPSPPHVRS KWRERSRRRS TSHASAKDRA AQGVKLEAKR EQEGAREKGR GRKIVGGITG  420
RVALSGQVTL ERFCHQCDVC GQHFATAAGV KRHQRIKHGK QAAEGVTGGR DPAELGAGAA  480
DEGEKAVDPA PGARKRKAGA IAPKELVGQG GGPDGDARRE GSGFGGGAAA QSPWRASATA  540
QARVGRGGGR RRNAVDEVDD VDDVDDVDDV DDVDDVDGRG AISSRALRGV LEAGGPAVVE  600
LSRHCMVWAD AFHKFSAAFR PLSREKLRPE KELKRAEEQI LLSKIAVREA MHELDDLSKQ  660
GAIDKDAFDS DGRIGYESIF CCLCSSPDTD PNNDILLCDG ECDRGFHQRC LDPPLATSDI  720
PPGEEGWLCP TCDCKTECIY LLNTKSGSFL SLASSWEVCS FDQFPSTIEN DSALQCAVRE  780
SLVPIGILSL HHLVLEFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	6e-43	HB-PHD family protein