PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG69372.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Nin-like

Protein Properties

Length: 913aa MW: 95454 Da PI: 6.8947

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG69372.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	79.1	4.9e-25	12	61	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++l++ls++F+lpi+d+A++Lg+c+TvLK++CR++GI RWP+Rk+++l GBG69372.1 12 RSLTLQELSEHFHLPINDVARKLGLCVTVLKQRCREHGITRWPYRKVRKL 61 689********************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 913 aa Download sequence
MPKPRGLAHR SRSLTLQELS EHFHLPINDV ARKLGLCVTV LKQRCREHGI TRWPYRKVRK 60 LDNMICALET NSSGCGGGNS DSEEEKRKQL ETVKETRSYL LANPNSSAHL RLGKVKYLCK 120 KSAGVKEDGQ HRDQLNQGEE INDVVSDKTT GGCSYKLLPS YCHPGKPDGP EKTAKRARTS 180 VGSSVTDVSA ASAQRAGFLS GADEEVPPSA TFMPAAMSMV MSSECPVRER DIHSGCVERV 240 MQGTISGAKD RSESSGCSLN GPMTELALSQ GSGVDDETDI HLGMSPTAKV RTRFHHTTTT 300 TTGSSLSPVS PSSEGSKEAA RLEMTGACLR PACNSSNGFN HHPQNKCVAP AIGIGSISTP 360 NVRCGGAYAG PVAGPGFISS GRLSAFRPLG KTTALMYSNS SQNGDGQSPV KVSLASDRGV 420 VNDMDKVSGV MCSNQQRQAC SGNSVSTSLG TCVVGDSVKL TLATGVRGDS SSPPPSPKQG 480 SLGQSGCTSG SDQPEHDAKP LLCKIDTKAS GSLCSEANSE ERDMVQEGFC CLPVISLSLK 540 SISDDVHPRC GDPVKHREPI EQVKKGTSQG NRNLFMLTSS TISEEQLEHC DHPSFCNRAT 600 CVIAEESHHE GSEDMLEKTD TVGTGEGAAT CKVEDGELSL QADYCIKQPG SAKSVSSSPV 660 SFAVAHWPCA VLADEEHDES ALQRVEIVPL SSNAGMSSRI QPVIIDANTC LTMSTCSATA 720 ARDTSPNSDK HSHPPAPRPL APSPTAPPLP CDISQSSGPL SAMSLATQHW LSPLLFPSSG 780 PSGGTSAAAV QLSSSLLNPL VLGMAPSVAP IGSVLCTNNM GGGTNPFGWA GVSRMMPWAL 840 GLHEMIGGMA GLVAATSSIR RAAIEAGGWG STAAGESCSA WKASDDSGNH SVSSSSVDCN 900 SSLSMAGLAV KRF

Sequence ? help Back to Top

Protein Sequence Length: 913 aa Download sequence

MPKPRGLAHR SRSLTLQELS EHFHLPINDV ARKLGLCVTV LKQRCREHGI TRWPYRKVRK  60
LDNMICALET NSSGCGGGNS DSEEEKRKQL ETVKETRSYL LANPNSSAHL RLGKVKYLCK  120
KSAGVKEDGQ HRDQLNQGEE INDVVSDKTT GGCSYKLLPS YCHPGKPDGP EKTAKRARTS  180
VGSSVTDVSA ASAQRAGFLS GADEEVPPSA TFMPAAMSMV MSSECPVRER DIHSGCVERV  240
MQGTISGAKD RSESSGCSLN GPMTELALSQ GSGVDDETDI HLGMSPTAKV RTRFHHTTTT  300
TTGSSLSPVS PSSEGSKEAA RLEMTGACLR PACNSSNGFN HHPQNKCVAP AIGIGSISTP  360
NVRCGGAYAG PVAGPGFISS GRLSAFRPLG KTTALMYSNS SQNGDGQSPV KVSLASDRGV  420
VNDMDKVSGV MCSNQQRQAC SGNSVSTSLG TCVVGDSVKL TLATGVRGDS SSPPPSPKQG  480
SLGQSGCTSG SDQPEHDAKP LLCKIDTKAS GSLCSEANSE ERDMVQEGFC CLPVISLSLK  540
SISDDVHPRC GDPVKHREPI EQVKKGTSQG NRNLFMLTSS TISEEQLEHC DHPSFCNRAT  600
CVIAEESHHE GSEDMLEKTD TVGTGEGAAT CKVEDGELSL QADYCIKQPG SAKSVSSSPV  660
SFAVAHWPCA VLADEEHDES ALQRVEIVPL SSNAGMSSRI QPVIIDANTC LTMSTCSATA  720
ARDTSPNSDK HSHPPAPRPL APSPTAPPLP CDISQSSGPL SAMSLATQHW LSPLLFPSSG  780
PSGGTSAAAV QLSSSLLNPL VLGMAPSVAP IGSVLCTNNM GGGTNPFGWA GVSRMMPWAL  840
GLHEMIGGMA GLVAATSSIR RAAIEAGGWG STAAGESCSA WKASDDSGNH SVSSSSVDCN  900
SSLSMAGLAV KRF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-11	Nin-like family protein