PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG68493.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 956aa MW: 104704 Da PI: 8.4698

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG68493.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	33.2	1.3e-10	353	429	2	70
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekk 70 W+ ++ aLi+a+r+ +++l r k k +We+v k++ + g+ +r+++ C +kw+nl +++k + + +++ GBG68493.1 353 WKVEHMIALIRAKRDQDSHLAglghnygRMKTKTWKWEDVEKRLVQMGVtSRKAVDCGKKWDNLYQQFKSVHKFMGE 429 999*********77777664444333779*********99999899***************99876665 PP

Sequence ? help Back to Top
Protein Sequence Length: 956 aa Download sequence
MADLYRRLPL LLLVALLLLI VVVFRICFLA HVLGRKQTRR TPKRSRKMDK LKTKTAMSVE 60 GGGSSRQRCN SAEGGRRPYD PTLYSHLPSH EIPLPPSDDD VDDPRSSTVP LGSGSTQDWM 120 GSQVYRHEST PTYTDLLEVR TPSGYDAGLV DLSFGLRSGS GEGMTHMVVV NPASATKHTS 180 PSVRAAGPAD SRGFVSSRRV ALSTTNVAAS RTKTGGLAGC RTTTPGGTID REGDDDERAA 240 TEVVGHQFWD DERQRLRSTH TSSITRGVAR MSVGADDVFV DCDAGGGEEI AADEGRDDNN 300 EDDDGEMEIH PVGRKREGST AKTKVRELRT GRKGKKCAEE LTAGDGTKNK DFWKVEHMIA 360 LIRAKRDQDS HLAGLGHNYG RMKTKTWKWE DVEKRLVQMG VTSRKAVDCG KKWDNLYQQF 420 KSVHKFMGES GKPNFFTLTP GERRERGFDF RMDERVYSEM KVMSGGDHTI HPTNLADTGA 480 PGGVQMHGPA GGRNESGGSD AGGGGPDDDR GSTRDSSFSG GGGGGGGAGK RKNVRQQTFE 540 AMADVMKEHG ALMSTTVDTA SKRQCSILTR QCDILEREIQ VQKEHYEKAD QANFMMCNAL 600 IEIAKGEEVS MVDAQGADVM SRLGFGRDGV SREQLAALKQ SLVGGVAVML ARTPKTAGIV 660 MTDVRMARQV PPKVGQGWKK HCLRKRLTRR RADGRTAAAN NTTRSGVAEA AEEGRVDDVR 720 RDDGRKDGRG EGDDDDDRPV SAMVKKVIKQ DDLEDRSKLW IDCDAFWGQG PGKPLREAVG 780 NCTDYFMAIA NRDAGAEPPS MLVMPPNDVP RFKIDDPAQR ELALRRARNV EKVVLRAIHG 840 WIFKSSSRSS GFARAESYVT VDFATDVARA VWQALEWSKV VSPALIYHTL AMKMGVPLWF 900 AGVKIVDRPE DDDMAAPQGA TVLRLADCWT DAVWCGQWAE GGRVKQDRLT RLADCL

Sequence ? help Back to Top

Protein Sequence Length: 956 aa Download sequence

MADLYRRLPL LLLVALLLLI VVVFRICFLA HVLGRKQTRR TPKRSRKMDK LKTKTAMSVE  60
GGGSSRQRCN SAEGGRRPYD PTLYSHLPSH EIPLPPSDDD VDDPRSSTVP LGSGSTQDWM  120
GSQVYRHEST PTYTDLLEVR TPSGYDAGLV DLSFGLRSGS GEGMTHMVVV NPASATKHTS  180
PSVRAAGPAD SRGFVSSRRV ALSTTNVAAS RTKTGGLAGC RTTTPGGTID REGDDDERAA  240
TEVVGHQFWD DERQRLRSTH TSSITRGVAR MSVGADDVFV DCDAGGGEEI AADEGRDDNN  300
EDDDGEMEIH PVGRKREGST AKTKVRELRT GRKGKKCAEE LTAGDGTKNK DFWKVEHMIA  360
LIRAKRDQDS HLAGLGHNYG RMKTKTWKWE DVEKRLVQMG VTSRKAVDCG KKWDNLYQQF  420
KSVHKFMGES GKPNFFTLTP GERRERGFDF RMDERVYSEM KVMSGGDHTI HPTNLADTGA  480
PGGVQMHGPA GGRNESGGSD AGGGGPDDDR GSTRDSSFSG GGGGGGGAGK RKNVRQQTFE  540
AMADVMKEHG ALMSTTVDTA SKRQCSILTR QCDILEREIQ VQKEHYEKAD QANFMMCNAL  600
IEIAKGEEVS MVDAQGADVM SRLGFGRDGV SREQLAALKQ SLVGGVAVML ARTPKTAGIV  660
MTDVRMARQV PPKVGQGWKK HCLRKRLTRR RADGRTAAAN NTTRSGVAEA AEEGRVDDVR  720
RDDGRKDGRG EGDDDDDRPV SAMVKKVIKQ DDLEDRSKLW IDCDAFWGQG PGKPLREAVG  780
NCTDYFMAIA NRDAGAEPPS MLVMPPNDVP RFKIDDPAQR ELALRRARNV EKVVLRAIHG  840
WIFKSSSRSS GFARAESYVT VDFATDVARA VWQALEWSKV VSPALIYHTL AMKMGVPLWF  900
AGVKIVDRPE DDDMAAPQGA TVLRLADCWT DAVWCGQWAE GGRVKQDRLT RLADCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	39	45	RRTPKRS