PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG68262.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

MYB

Protein Properties

Length: 2591aa MW: 278724 Da PI: 7.116

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG68262.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.1	1.7e-07	562	606	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+W++ Ed++l+ ++ +W++Ia+++g gRt+ qc r+q GBG68262.1 562 GPWSKVEDKRLLSIAREEKYVNWSRIAERLGSGRTAGQCLTRFQR 606 89**************999*******************995 PP
2	Myb_DNA-binding	46.3	9.9e-15	616	658	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W ++Edell +av+++G ++W Ia++++ gRt+ qc +rw k GBG68262.1 616 KWIPQEDELLRKAVRKYGEHRWQDIAQCVP-GRTGHQCLHRWTK 658 899*************************.*********76 PP
3	Myb_DNA-binding	50.8	3.9e-16	666	712	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd+ l++a+ ++G ++W++Ia++++ gRt+ qc++rw ++l GBG68262.1 666 KGKWLPEEDKALIHAIGMFGVKQWSKIAAHVP-GRTDVQCRERWCNVL 712 79****************************.*********9975 PP
4	Myb_DNA-binding	51.4	2.5e-16	720	762	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eEd++l +av+++ g W+++a++m+ gRt+++c rw GBG68262.1 720 SWTPEEDKKLMEAVAKHEVGKWSAVASEMP-GRTDNHCWRRWKV 762 7***************************.*********86 PP

Sequence ? help Back to Top
Protein Sequence Length: 2591 aa Download sequence
MNPVVPDDVI VLEDDPEEGE EDDREECGGE ARQCRGEDER NAVVGRYAVD SDEEGLDGEC 60 RDPNVEDRGD GHGDGDENDD DAILRSVQAD IGIGWGPRRP ATLSHQRASD SDEDKDDDEV 120 LESIKRRYRR MDDERHGDKG KGRSNERRSA DKSDLAVTTF DDRQARVLGH DSSNNAGSVV 180 ERRYHSEFAK RAGTGSAAAK VGRNGGASYA IDSAGGGPSM GVIRPDADPD PDGVERGKRH 240 PVIPNAHNAI VHVSDPLPVT AAAGAAAECD PILLLPAPDG DQSSDADRDP DGDVDGDEDG 300 DKQEVIKEAV IAEGGIGAIE DALEKNRRCQ AAHREVLERI AIRQRENERI LRRVRVLLGY 360 ENSVKKRRQP TRAIPGAAGK EDDEEGVEAL FGEADGIGAG MPLADLLFEW KKKSLKKKGK 420 SAAASAPANE EGGEQEWGLP ENADMKKLRP VMERLPLILD IRKWTDQERS KLKNAMKMKA 480 QEKILSDLYQ ELGDRDITPE KASDLDQRLA DLGTREVTAD ELAAIVPSLD WEDFASCYLP 540 SRSGIDCKIQ WLNQDDPKIK QGPWSKVEDK RLLSIAREEK YVNWSRIAER LGSGRTAGQC 600 LTRFQRSLNA QILNSKWIPQ EDELLRKAVR KYGEHRWQDI AQCVPGRTGH QCLHRWTKGL 660 KPDIRKGKWL PEEDKALIHA IGMFGVKQWS KIAAHVPGRT DVQCRERWCN VLDPGLKQDS 720 WTPEEDKKLM EAVAKHEVGK WSAVASEMPG RTDNHCWRRW KVLHAEQVGP YIRSVKIKRV 780 AMVSNFVGRE SERPELGPQD FRITNSLEEL EPTATVNRRP KMKPRRRCRG QSMAGEAVDD 840 ENVDCALSAG QGSEAGQSSH EEAVAGSEAP VHGKGRHAGK EKRRRAMARK VRSRDGGSLG 900 GEDGMLDGAP SATQSVVGAE GSPVDDNATC PAVNTGNNRV RGAQKKSRRR NVVAGLPDSL 960 KANGTRKRRT NAGKGGQQYD ESQQQESTPA GDSAAAMGQE GCPLGTEKRP AALTSQEAFA 1020 LQKILEWHGH LAGIPQGGGA SVVCDVGDTS VEAGAPVTPQ EMLCARGVAP ANGEALTRRG 1080 ERVHVDGGKR RPRKRSAPVS EKNNNTSEQE PNGRGRGGGG GRSRRKQSAA LLEQGIVECE 1140 EETVRKKRPR RGGKHADERR PPSTIPTGDE NSQVREVSVL WNADNGFEAG ADGEEESLPL 1200 ALHSPLGAAR EDLAIGDVLC RNGVDDTEEM RIPLSMSMGS KTHNKRKRLS KNPLVDLEAE 1260 ADGGHGGKRK KRLSSGLEHR NCHSDEPASP SENGQTKKGR RRRQSKEDQT HFKPGGPPHE 1320 VLTDGAPPIL DNPSQEAANG RKNERRNVGG RRRKDLSSSG LENGKSPRAA KSPSSQSSQR 1380 RKGRRQSKAE EAHSKRDGPP NKEVMDGNPL ILDDASQPVL MMANEHGTAS SALAQRETHC 1440 EQGEAPLQIV EEAIVQQDEN GNVGLKHHES GNGHGCATSR DMECSEHGCL TLAEVNTTPV 1500 VPPTGVEVGG VDSSMAGIAA GARALGTICD RNKESVILGS QSAGVAKAFQ YNDQLARLYE 1560 PERVTAARQK RRERKMLMMQ GRSHGVRKGK KALPKGEGSA DRQVGRGGYL EGVENHVVAK 1620 EVAGGKNRVG VEGEGDDAGE VRDGGNPTDP TDSTEIEQRN NLSCSRGTSA LPAYPAWAAA 1680 LRRRATGSEV SPRSLRPSGY LPPSQCLFSP RPVASSGRPP LLNCFAGFSG PYSPAVRPSP 1740 VRPPMRQPTT QVSARPHPNF TTLLLGQTNS KPSTPSRSSS SQDASSPFIP HTSAVSVPVQ 1800 FAGSSPGMAE RASNSLAATS TTDQLPRGHK KALPVAHLLD FTSAVLASNA ATRLTGPETP 1860 AMHNCNEAES GMKPSSSSLP ENPLDDRAQS SESPVDVESS GRETCQPNDG ICLEGDAAEA 1920 EGICDLEEAE PRMNPSSLHE TQLLNTSQLS GAPLNLSCKR ADQSHGEGLE TVAAETPAMC 1980 HHKESEHGMN PSSLPERPLP NNTRTLSPAP ADSSGRKTDQ PNGIRLPIQA AASGHGLQET 2040 GVCKCADRSS AEHVEEPSER SSEKQCRLPA GSSQRVLQNG ESAGKQRWRA EEHFAGAENA 2100 TATVQLDYAG RSPSKLDAQR FVVATAHSNR DENICGSLSH TMDSPAKSSN GLCALPYRSS 2160 EHNRCIDYGT AVCDSNAEHA HRLEGSDAAA AEVIRLPAVG VSETVGAEPG HYEVNRVAMG 2220 QTVPANPSKA GAKAADACSP RKMRRLCNSS SSADGDDSEV SAARRSMSKR RRWTISDGHW 2280 CGDVSSFLEG RSLNSIDGAE SKLVKRRPQG ATEEEGVRKS HYPSCASADE GRFELSVGCA 2340 TKGGKVDGLI TPLKDIHTAG ETGRRRVTRG RCATCNQLIS TGEDDGPDTA CSKDPITSPG 2400 KAPGGGPLPG GGPLPGGGPL PGGGPLPGGS QQQWNAKTHD CLLWRGCLPQ LKGCQQTDWR 2460 PLKSCCAAIG CRRRRRGESM KCCDGSERGA GASAKTFLLR AQATAMVASG APGFAPCCCM 2520 IEMGSLVRKR REFGNALVTN KASNLKSGVS AAEEAVSGRE RSGCLSVSLR KQEPEVLKLV 2580 EWLWTMWSDG E

Sequence ? help Back to Top

Protein Sequence Length: 2591 aa Download sequence

MNPVVPDDVI VLEDDPEEGE EDDREECGGE ARQCRGEDER NAVVGRYAVD SDEEGLDGEC  60
RDPNVEDRGD GHGDGDENDD DAILRSVQAD IGIGWGPRRP ATLSHQRASD SDEDKDDDEV  120
LESIKRRYRR MDDERHGDKG KGRSNERRSA DKSDLAVTTF DDRQARVLGH DSSNNAGSVV  180
ERRYHSEFAK RAGTGSAAAK VGRNGGASYA IDSAGGGPSM GVIRPDADPD PDGVERGKRH  240
PVIPNAHNAI VHVSDPLPVT AAAGAAAECD PILLLPAPDG DQSSDADRDP DGDVDGDEDG  300
DKQEVIKEAV IAEGGIGAIE DALEKNRRCQ AAHREVLERI AIRQRENERI LRRVRVLLGY  360
ENSVKKRRQP TRAIPGAAGK EDDEEGVEAL FGEADGIGAG MPLADLLFEW KKKSLKKKGK  420
SAAASAPANE EGGEQEWGLP ENADMKKLRP VMERLPLILD IRKWTDQERS KLKNAMKMKA  480
QEKILSDLYQ ELGDRDITPE KASDLDQRLA DLGTREVTAD ELAAIVPSLD WEDFASCYLP  540
SRSGIDCKIQ WLNQDDPKIK QGPWSKVEDK RLLSIAREEK YVNWSRIAER LGSGRTAGQC  600
LTRFQRSLNA QILNSKWIPQ EDELLRKAVR KYGEHRWQDI AQCVPGRTGH QCLHRWTKGL  660
KPDIRKGKWL PEEDKALIHA IGMFGVKQWS KIAAHVPGRT DVQCRERWCN VLDPGLKQDS  720
WTPEEDKKLM EAVAKHEVGK WSAVASEMPG RTDNHCWRRW KVLHAEQVGP YIRSVKIKRV  780
AMVSNFVGRE SERPELGPQD FRITNSLEEL EPTATVNRRP KMKPRRRCRG QSMAGEAVDD  840
ENVDCALSAG QGSEAGQSSH EEAVAGSEAP VHGKGRHAGK EKRRRAMARK VRSRDGGSLG  900
GEDGMLDGAP SATQSVVGAE GSPVDDNATC PAVNTGNNRV RGAQKKSRRR NVVAGLPDSL  960
KANGTRKRRT NAGKGGQQYD ESQQQESTPA GDSAAAMGQE GCPLGTEKRP AALTSQEAFA  1020
LQKILEWHGH LAGIPQGGGA SVVCDVGDTS VEAGAPVTPQ EMLCARGVAP ANGEALTRRG  1080
ERVHVDGGKR RPRKRSAPVS EKNNNTSEQE PNGRGRGGGG GRSRRKQSAA LLEQGIVECE  1140
EETVRKKRPR RGGKHADERR PPSTIPTGDE NSQVREVSVL WNADNGFEAG ADGEEESLPL  1200
ALHSPLGAAR EDLAIGDVLC RNGVDDTEEM RIPLSMSMGS KTHNKRKRLS KNPLVDLEAE  1260
ADGGHGGKRK KRLSSGLEHR NCHSDEPASP SENGQTKKGR RRRQSKEDQT HFKPGGPPHE  1320
VLTDGAPPIL DNPSQEAANG RKNERRNVGG RRRKDLSSSG LENGKSPRAA KSPSSQSSQR  1380
RKGRRQSKAE EAHSKRDGPP NKEVMDGNPL ILDDASQPVL MMANEHGTAS SALAQRETHC  1440
EQGEAPLQIV EEAIVQQDEN GNVGLKHHES GNGHGCATSR DMECSEHGCL TLAEVNTTPV  1500
VPPTGVEVGG VDSSMAGIAA GARALGTICD RNKESVILGS QSAGVAKAFQ YNDQLARLYE  1560
PERVTAARQK RRERKMLMMQ GRSHGVRKGK KALPKGEGSA DRQVGRGGYL EGVENHVVAK  1620
EVAGGKNRVG VEGEGDDAGE VRDGGNPTDP TDSTEIEQRN NLSCSRGTSA LPAYPAWAAA  1680
LRRRATGSEV SPRSLRPSGY LPPSQCLFSP RPVASSGRPP LLNCFAGFSG PYSPAVRPSP  1740
VRPPMRQPTT QVSARPHPNF TTLLLGQTNS KPSTPSRSSS SQDASSPFIP HTSAVSVPVQ  1800
FAGSSPGMAE RASNSLAATS TTDQLPRGHK KALPVAHLLD FTSAVLASNA ATRLTGPETP  1860
AMHNCNEAES GMKPSSSSLP ENPLDDRAQS SESPVDVESS GRETCQPNDG ICLEGDAAEA  1920
EGICDLEEAE PRMNPSSLHE TQLLNTSQLS GAPLNLSCKR ADQSHGEGLE TVAAETPAMC  1980
HHKESEHGMN PSSLPERPLP NNTRTLSPAP ADSSGRKTDQ PNGIRLPIQA AASGHGLQET  2040
GVCKCADRSS AEHVEEPSER SSEKQCRLPA GSSQRVLQNG ESAGKQRWRA EEHFAGAENA  2100
TATVQLDYAG RSPSKLDAQR FVVATAHSNR DENICGSLSH TMDSPAKSSN GLCALPYRSS  2160
EHNRCIDYGT AVCDSNAEHA HRLEGSDAAA AEVIRLPAVG VSETVGAEPG HYEVNRVAMG  2220
QTVPANPSKA GAKAADACSP RKMRRLCNSS SSADGDDSEV SAARRSMSKR RRWTISDGHW  2280
CGDVSSFLEG RSLNSIDGAE SKLVKRRPQG ATEEEGVRKS HYPSCASADE GRFELSVGCA  2340
TKGGKVDGLI TPLKDIHTAG ETGRRRVTRG RCATCNQLIS TGEDDGPDTA CSKDPITSPG  2400
KAPGGGPLPG GGPLPGGGPL PGGGPLPGGS QQQWNAKTHD CLLWRGCLPQ LKGCQQTDWR  2460
PLKSCCAAIG CRRRRRGESM KCCDGSERGA GASAKTFLLR AQATAMVASG APGFAPCCCM  2520
IEMGSLVRKR REFGNALVTN KASNLKSGVS AAEEAVSGRE RSGCLSVSLR KQEPEVLKLV  2580
EWLWTMWSDG E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	415	421	LKKKGKS
2	948	969	RRRNVVAGLPDSLKANGTRKRR
3	965	970	TRKRRT
4	1379	1385	QRRKGRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.2	5e-85	MYB family protein