PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG67075.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 838aa MW: 90378.9 Da PI: 6.8322

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG67075.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	30	1.4e-09	261	346	2	69
trihelix 2 WtkqevlaLiearr..................emeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 Wt++e+ aLi+ + + We+++ mr++g +r+++qC+++w+ l +k ++ + GBG67075.1 261 WTNDETVALIDSKGmheagrllelsptgsisgA--------RrtwettyeESRRGWEHIAGLMRSEGHKRGATQCRSRWRCLWSSFKTARRYMV 346 **********998888877766666655442........02223333378899******************************9887665 PP

Sequence ? help Back to Top
Protein Sequence Length: 838 aa Download sequence
MSSASCEQPA NRPIPTISCN SERTPVHAGG ADSAPIDFCT QQLVGVGISL SPLTRREVAN 60 AGSQKASLFI DLRSNERDDG DIAGWMPALF QSPGTESLRV PNVVSPLASS DIQEITADEY 120 QQSLRRKAVE NGHDVRANDV EPAMSASQAA AVLECLRSTS GERKVRGVEA HIVGAKRMES 180 KKIGSSTTVG GGDGNSGETV PVHVGGVNEV EHHVGRSAAW ADASDGGGEF FKSRHQYPTS 240 NPHDANDIES IDSPTQCCGG WTNDETVALI DSKGMHEAGR LLELSPTGSI SGARRTWETT 300 YEESRRGWEH IAGLMRSEGH KRGATQCRSR WRCLWSSFKT ARRYMVRDDQ PPYWEMSVED 360 RRDCGLETHF TREWFELIQS YSQQWDSCIP HRGIRISKVG ANGEESNHNQ HAEHRGQGTP 420 KKPRTVVEEL EKTVKDLCNT ASTCTARQVE LLDLHSERIA SLQRESAKNF VATMEAAWRV 480 VSDIMRDERH LLLPLLDRGI AVVSTEDGSR TSYTMSIFRG FTGALNPSRT IYYVGTYRCI 540 KYSVMDGDSP ASFGNEFRSI SCPTVSGLLF SRRNFLQDGS YLYAWEKSNR TVLGIDLISG 600 AVTAIPQIRD QAVGDFALTQ DGCNMFAIAG KSIMRADFDK PGGKVVKVEY VTTYASQHYD 660 IRTASLDNDG SHLYVATSNG QLLQFPINKS ALGECSGALP TPAAPTGAAS AYQSPSPAPS 720 TGASPAAGAL SSAGHDGSST GVSGRLADTL SSPSPTTVRT PPRGRVNVGV QACSFVAACL 780 VSAVLGGALV LLVSRSRKSA KAESGVMTAM STALEHPVER CSALEHPVQR CSALERPS

Sequence ? help Back to Top

Protein Sequence Length: 838 aa Download sequence

MSSASCEQPA NRPIPTISCN SERTPVHAGG ADSAPIDFCT QQLVGVGISL SPLTRREVAN  60
AGSQKASLFI DLRSNERDDG DIAGWMPALF QSPGTESLRV PNVVSPLASS DIQEITADEY  120
QQSLRRKAVE NGHDVRANDV EPAMSASQAA AVLECLRSTS GERKVRGVEA HIVGAKRMES  180
KKIGSSTTVG GGDGNSGETV PVHVGGVNEV EHHVGRSAAW ADASDGGGEF FKSRHQYPTS  240
NPHDANDIES IDSPTQCCGG WTNDETVALI DSKGMHEAGR LLELSPTGSI SGARRTWETT  300
YEESRRGWEH IAGLMRSEGH KRGATQCRSR WRCLWSSFKT ARRYMVRDDQ PPYWEMSVED  360
RRDCGLETHF TREWFELIQS YSQQWDSCIP HRGIRISKVG ANGEESNHNQ HAEHRGQGTP  420
KKPRTVVEEL EKTVKDLCNT ASTCTARQVE LLDLHSERIA SLQRESAKNF VATMEAAWRV  480
VSDIMRDERH LLLPLLDRGI AVVSTEDGSR TSYTMSIFRG FTGALNPSRT IYYVGTYRCI  540
KYSVMDGDSP ASFGNEFRSI SCPTVSGLLF SRRNFLQDGS YLYAWEKSNR TVLGIDLISG  600
AVTAIPQIRD QAVGDFALTQ DGCNMFAIAG KSIMRADFDK PGGKVVKVEY VTTYASQHYD  660
IRTASLDNDG SHLYVATSNG QLLQFPINKS ALGECSGALP TPAAPTGAAS AYQSPSPAPS  720
TGASPAAGAL SSAGHDGSST GVSGRLADTL SSPSPTTVRT PPRGRVNVGV QACSFVAACL  780
VSAVLGGALV LLVSRSRKSA KAESGVMTAM STALEHPVER CSALEHPVQR CSALERPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	420	426	PKKPRTV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	9e-06	Trihelix family protein