PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG65425.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Protein Properties

Length: 415aa MW: 45349.1 Da PI: 10.8136

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG65425.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41.4	2.6e-13	62	150	3	99
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 k l p++v + +l lp +f + + s ++ led+ g+ W+ ++ +++++ +l++GW+ F+k++gL +D v+++ + s+++l+v++fr+ GBG65425.1 62 KLLQPAHVERFFILNLPSEFSRLLPRS--IS-KMWLEDSMGNAWTSRF--LGSKRG-ILSGGWRAFAKDHGLVPNDWVILE---KlSDTRLKVSIFRS 150 77888899999999****9655322..33.8***********..888777.6999****************...5589999***96 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MVKKMGSNRV KGVVKANGIP AEKATTMEMG LKQVDDNPFR GKGVLLEDVV ESLVVEGKNC 60 AKLLQPAHVE RFFILNLPSE FSRLLPRSIS KMWLEDSMGN AWTSRFLGSK RGILSGGWRA 120 FAKDHGLVPN DWVILEKLSD TRLKVSIFRS GGKPPLNPPP KKNGRRPKAE MEARAKAENS 180 AQDLELLSKA IQRRKRTALV SNGSGEGTGK RRKVGTRPPE ESLGVEMGKN DAVDGRTEKG 240 DSLPNLPAAV INTEEGRRVG RIRSNRGKSQ VEGRYVNQGA VVLSNSTEEK GESKSTPLKK 300 AGGVSDGDAM KKSPKAFDLL KPRKTSLVSG QGGQEAEDLS YVDVAKEGII TVVQVLDKRI 360 TETGKQQLYV LLSGADKPLW IDQNALSTDK LFDKTPPPLR GRPATTNRNK KKGKR

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MVKKMGSNRV KGVVKANGIP AEKATTMEMG LKQVDDNPFR GKGVLLEDVV ESLVVEGKNC  60
AKLLQPAHVE RFFILNLPSE FSRLLPRSIS KMWLEDSMGN AWTSRFLGSK RGILSGGWRA  120
FAKDHGLVPN DWVILEKLSD TRLKVSIFRS GGKPPLNPPP KKNGRRPKAE MEARAKAENS  180
AQDLELLSKA IQRRKRTALV SNGSGEGTGK RRKVGTRPPE ESLGVEMGKN DAVDGRTEKG  240
DSLPNLPAAV INTEEGRRVG RIRSNRGKSQ VEGRYVNQGA VVLSNSTEEK GESKSTPLKK  300
AGGVSDGDAM KKSPKAFDLL KPRKTSLVSG QGGQEAEDLS YVDVAKEGII TVVQVLDKRI  360
TETGKQQLYV LLSGADKPLW IDQNALSTDK LFDKTPPPLR GRPATTNRNK KKGKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	193	213	RRKRTALVSNGSGEGTGKRRK
2	194	214	RRKRTALVSNGSGEGTGKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	2e-09	B3 family protein