PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG63892.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

NAC

Protein Properties

Length: 861aa MW: 92032.8 Da PI: 5.185

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG63892.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	62.1	1.8e-19	8	76	55	128
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 e + ++F++ +k+y++g+r r+t gyWk+tg+d++v+ g+ k+Lvfy g++++g+k++Wvm+eyrl GBG63892.1 8 EPQGFYFVPLQKRYPNGNRDCRSTPGGYWKKTGEDHPVIG-----GGTEKILVFYAGKRKDGVKSSWVMKEYRL 76 4467********************************99.....6899*********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 861 aa Download sequence
MSEEEGSEPQ GFYFVPLQKR YPNGNRDCRS TPGGYWKKTG EDHPVIGGGT EKILVFYAGK 60 RKDGVKSSWV MKEYRLNLGP NEGRPDVLWV VCKIYKQEKE RRGRGSSSVP QTPINTDKGR 120 LHGLDDLPGS PMDSTISTPL RANMLGQNGS GSCLVDTPSP GDVSYVRKPG TASRGSSSRF 180 QASSKNLREK LDTAEVMGNA EAGDNAQNTD QGMVVSDHTE PQAYYWGGSG IVSDVRLLPS 240 HLEAVSGSSG CQVLLNVGEC TGDQTRLERD GCQPSDASLQ SFPERRMSVV GTAGQQGVAK 300 STPDAGQVVV KQEPMFDGPV PLLESQDMSS LLSGLAHDTQ SQENFVQNLV VANQVRDVGK 360 ETMEVGREME PGDGTDCANL AGQYFDQKCS QDETSLENLA SPAPLASTVQ LIGEGEDVRK 420 WSGCKFSKGD DRLTLTQELN EEGYKNGTHL IGSPVGTQIA AVDDLTGGPN HRGNVQCTSR 480 IPGQSRVVGG GPVTFSSSLL FQKQPKRSLF HAAGIGNGEG EEEIGFGNQS YELSAVVQGY 540 TRLGCGYPQF ITSQSSPQMG DVSRTPCEPH GMEILLASDK SNSQTTISYD ILHPSIVGSS 600 LRPHSGNTPI RSQRMNTFES GSRLGINSLD CGSDGITDVG DGGGIAELVS GVKRSSPGQP 660 ASVDGSFSKL ARRGSGKDSS SPNSEAQSHG YGSPRDVEHS VIEKGSFFDG GRRKLKRLAP 720 IPGRDEPLQP ITRISAHTLE GHQDLGQTCP PSLLEVSHSS VMVGRGERTP PVLPVPSRRS 780 GTHYGDDCLP LVCGMEDKEE RTGGSTGLGH FEDVWSSRAV KYLLGGDETI TGPPTPSSQD 840 QSLDRYFAED IPRLSDGSQD C

Sequence ? help Back to Top

Protein Sequence Length: 861 aa Download sequence

MSEEEGSEPQ GFYFVPLQKR YPNGNRDCRS TPGGYWKKTG EDHPVIGGGT EKILVFYAGK  60
RKDGVKSSWV MKEYRLNLGP NEGRPDVLWV VCKIYKQEKE RRGRGSSSVP QTPINTDKGR  120
LHGLDDLPGS PMDSTISTPL RANMLGQNGS GSCLVDTPSP GDVSYVRKPG TASRGSSSRF  180
QASSKNLREK LDTAEVMGNA EAGDNAQNTD QGMVVSDHTE PQAYYWGGSG IVSDVRLLPS  240
HLEAVSGSSG CQVLLNVGEC TGDQTRLERD GCQPSDASLQ SFPERRMSVV GTAGQQGVAK  300
STPDAGQVVV KQEPMFDGPV PLLESQDMSS LLSGLAHDTQ SQENFVQNLV VANQVRDVGK  360
ETMEVGREME PGDGTDCANL AGQYFDQKCS QDETSLENLA SPAPLASTVQ LIGEGEDVRK  420
WSGCKFSKGD DRLTLTQELN EEGYKNGTHL IGSPVGTQIA AVDDLTGGPN HRGNVQCTSR  480
IPGQSRVVGG GPVTFSSSLL FQKQPKRSLF HAAGIGNGEG EEEIGFGNQS YELSAVVQGY  540
TRLGCGYPQF ITSQSSPQMG DVSRTPCEPH GMEILLASDK SNSQTTISYD ILHPSIVGSS  600
LRPHSGNTPI RSQRMNTFES GSRLGINSLD CGSDGITDVG DGGGIAELVS GVKRSSPGQP  660
ASVDGSFSKL ARRGSGKDSS SPNSEAQSHG YGSPRDVEHS VIEKGSFFDG GRRKLKRLAP  720
IPGRDEPLQP ITRISAHTLE GHQDLGQTCP PSLLEVSHSS VMVGRGERTP PVLPVPSRRS  780
GTHYGDDCLP LVCGMEDKEE RTGGSTGLGH FEDVWSSRAV KYLLGGDETI TGPPTPSSQD  840
QSLDRYFAED IPRLSDGSQD C

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	711	718	GRRKLKRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	3e-19	NAC family protein