PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GBG63026.1
Organism
Chara braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
Family Trihelix
Protein Properties Length: 478aa    MW: 51636.6 Da    PI: 7.1223
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GBG63026.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix32.72e-10240316270
    trihelix   2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekk 70 
                 Wt ++  a i+a+r        ++++++r k k  +W++v k++ + g+ +r+++ C++kw+nl +++k + + +++
  GBG63026.1 240 WTVDHMIAVIRAKRdqdlhlaGLGHNSGRMKTKTWKWDDVEKRLVQMGLmSRKAEDCRKKWDNLYQQFKTVHKFMGE 316
                 9*************555555555566667899************9999989******************99876665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    
MGSQLYRQTS TPTYTDLLER RTPVGYDAGL VDLSFGLRSG SAEDVTHTVL VNPTSDTNHA  60
PPSVGLSGLP DTHAWCSGQS GDERGVLLRR RGAVVTAGVA VSRTRTGGST TPTGRIDGRG  120
DDDEGSAAEV VGRKVWDDHR RQSRQSSKSA ITRGVANINV RADDVFGDCD GAGGEDCAAG  180
NGSNDNDEDD DGKMEIRPIG RKRGGSRATN KSTEPRAGRG GKKGAGDTST CEVAKSRDFW  240
TVDHMIAVIR AKRDQDLHLA GLGHNSGRMK TKTWKWDDVE KRLVQMGLMS RKAEDCRKKW  300
DNLYQQFKTV HKFMGESGKP NFFTLTPGER KERGFDFRMD ERVYSKMKAM SRGDHTIHPT  360
NLADTGVAEG VQMPCPRGGR NESGGSEGCG DGQDDDQGST RDSTFSGVGG GGGGRRKNVR  420
QQTFDTIADD GGQREQEAVL NSDEAMQHSG ARARSAEGTL REGRPDELHD VQRPSGDC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1414421GRRKNVRQ