PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GBG62410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
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Family | LBD | ||||||||
Protein Properties | Length: 178aa MW: 19050.5 Da PI: 6.6156 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 145.5 | 1.6e-45 | 8 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC+++C +apyfp +qp+kfanvhk+FGasn++kll++lp ++reda++sl+yeA+ar++dPvyG+vg i+ lqqq+++l+aela +++ GBG62410.1 8 PCAACKFLRRKCTSECLFAPYFPPDQPQKFANVHKIFGASNITKLLHDLPVHQREDAVNSLAYEADARVKDPVYGCVGAISVLQQQVAHLQAELAIAHA 106 7**********************************************************************************************9998 PP DUF260 100 e 100 e GBG62410.1 107 E 107 7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence |
MGSSAISPCA ACKFLRRKCT SECLFAPYFP PDQPQKFANV HKIFGASNIT KLLHDLPVHQ 60 REDAVNSLAY EADARVKDPV YGCVGAISVL QQQVAHLQAE LAIAHAEIQR LHNAAANSGS 120 IPVSSKDLLE LGAGGAGGSY DTAFTVSDDA LRQQLSEQMS SQMHNITQQM GSQLAAQL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 7e-59 | LBD family protein |