PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG62226.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

C2H2

Protein Properties

Length: 354aa MW: 38255.6 Da PI: 4.364

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG62226.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.7e-05	330	353	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C++ F + L++H + H GBG62226.1 330 FTCKECNRGFASETALQSHKQAkH 353 89*****************98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MMAWGIEVPG GSKPVTVTPE EGTHLHLSQV ALGHNPKDNE RAVLSVEHED KKWVIGTLVK 60 GKTDQFQLDL VFDRTFKLSH SGSTGVYVIG YESFESTLAS SDEEEMGLDE EDVKDIKEEV 120 KAKQVGKVKE EKKDVKESKD GKDKSKAAAD VKAAAKENGK LAKADAAAGA EAGKDAKKAA 180 KVAAPSPMKD SDEEDDSDDD MDEDSDEEEF EDEDDEDEDE DDDEDDDEDD DDEEESDEGE 240 DMDELLAKPV VVGKKRPNPA VETPKAEKKA KVAQETPTPK KDGKGSKKDK SEGKDKSDGK 300 DAKPAGKDKP AKDAAKAAGG KDASTPKKAF TCKECNRGFA SETALQSHKQ AKHS

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MMAWGIEVPG GSKPVTVTPE EGTHLHLSQV ALGHNPKDNE RAVLSVEHED KKWVIGTLVK  60
GKTDQFQLDL VFDRTFKLSH SGSTGVYVIG YESFESTLAS SDEEEMGLDE EDVKDIKEEV  120
KAKQVGKVKE EKKDVKESKD GKDKSKAAAD VKAAAKENGK LAKADAAAGA EAGKDAKKAA  180
KVAAPSPMKD SDEEDDSDDD MDEDSDEEEF EDEDDEDEDE DDDEDDDEDD DDEEESDEGE  240
DMDELLAKPV VVGKKRPNPA VETPKAEKKA KVAQETPTPK KDGKGSKKDK SEGKDKSDGK  300
DAKPAGKDKP AKDAAKAAGG KDASTPKKAF TCKECNRGFA SETALQSHKQ AKHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	1e-17	C2H2 family protein