PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG60832.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

C3H

Protein Properties

Length: 704aa MW: 70661.5 Da PI: 5.0849

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG60832.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.1	1.5e-08	203	224	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 + C++f+r G C++G++C+++H GBG60832.1 203 PPVCQYFLR-GNCRFGAKCRYSH 224 589****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence
MEGQLKEEEE EEEEEEEEEE EEEEEMGGEE GAHADGYVVV EGEEPWKGLT NVMCGLFQES 60 SRRCGGGGGG GGRIGGAGGG AGGGAGGGAG GGGGGGGGGG GGGGGSGRCS ASDETDIRRV 120 DDVEGEVLGR ESSAPYPSQG KDGDVKRRRR GRGGKTASTT GGESREEEWT RTRKRGGRGG 180 GGVGEEKEEE EEVEEMNRGQ QQPPVCQYFL RGNCRFGAKC RYSHAVPAER HQSVHDRLVF 240 PDGGRGGGGG GGGGGGRGGG GGFVGNSNRF SALGSPSATS FGGGAFSPAA PAFGGAGGGA 300 SGSAPSITYR DHRCDNLRQC WAQIKEDFQH ERPLYWRLTC YSHWKYLPND VAGDVSFEEL 360 RWEAYSGWRH QGQSLPQVIE REKRLIAAKE SVFHQLLHTP YQGPIGIGGG VASSSFPAQL 420 RQQQLQPPSR TTSFPTPPPP SLSPSSPFLF GKPVVAGTYP NAAPSGGGGG GGGGGGGVFG 480 AIPTTHHHLA QQGFAGGGGG GGSVPPWNTV ESGLGAFGIN RGPFGFRPPM AVGIGGGGGG 540 GGGAPSAAGG FPPIANNTAS GPAFAGAEGG SGFLTCPPNS AFSNTSNNAF PPNSAFSNST 600 SAAINSSGVN NGMSQQPSVG GNGMIFTPTV AGSAGNMNIL NAAAAAGGGG GGGGGGGGVE 660 GGIASGSGNS YQGQMGNNKE DIWTKGGWSI GEIPEQEPPV YARY

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence

MEGQLKEEEE EEEEEEEEEE EEEEEMGGEE GAHADGYVVV EGEEPWKGLT NVMCGLFQES  60
SRRCGGGGGG GGRIGGAGGG AGGGAGGGAG GGGGGGGGGG GGGGGSGRCS ASDETDIRRV  120
DDVEGEVLGR ESSAPYPSQG KDGDVKRRRR GRGGKTASTT GGESREEEWT RTRKRGGRGG  180
GGVGEEKEEE EEVEEMNRGQ QQPPVCQYFL RGNCRFGAKC RYSHAVPAER HQSVHDRLVF  240
PDGGRGGGGG GGGGGGRGGG GGFVGNSNRF SALGSPSATS FGGGAFSPAA PAFGGAGGGA  300
SGSAPSITYR DHRCDNLRQC WAQIKEDFQH ERPLYWRLTC YSHWKYLPND VAGDVSFEEL  360
RWEAYSGWRH QGQSLPQVIE REKRLIAAKE SVFHQLLHTP YQGPIGIGGG VASSSFPAQL  420
RQQQLQPPSR TTSFPTPPPP SLSPSSPFLF GKPVVAGTYP NAAPSGGGGG GGGGGGGVFG  480
AIPTTHHHLA QQGFAGGGGG GGSVPPWNTV ESGLGAFGIN RGPFGFRPPM AVGIGGGGGG  540
GGGAPSAAGG FPPIANNTAS GPAFAGAEGG SGFLTCPPNS AFSNTSNNAF PPNSAFSNST  600
SAAINSSGVN NGMSQQPSVG GNGMIFTPTV AGSAGNMNIL NAAAAAGGGG GGGGGGGGVE  660
GGIASGSGNS YQGQMGNNKE DIWTKGGWSI GEIPEQEPPV YARY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	182	GGRGGGG
2	243	249	GGRGGGG
3	245	257	RGGGGGGGGGGGR
4	253	259	GGRGGGG
5	254	260	GGRGGGG
6	255	261	GGRGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75340.1	5e-23	C3H family protein