PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GBG59894.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
Family C2H2
Protein Properties Length: 895aa    MW: 99990.6 Da    PI: 6.2229
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GBG59894.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.6e-06747768423
                 T..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   4 p..dCgksFsrksnLkrHirtH 23 
                     Cg++F ++ nL+ H++ H
  GBG59894.1 747 LepGCGRRFATPGNLRDHMNEH 768
                 5559****************99 PP

2zf-C2H217.98.5e-06774798123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 ykC+   Cg +F++k +L rH+++H
  GBG59894.1 774 YKCTtdGCGARFPSKQLLCRHMKKH 798
                 99**********************9 PP

3zf-C2H215.16.8e-05802826123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 ++C+   Cgk+F  k+ L++H++ H
  GBG59894.1 802 HVCTfeGCGKRFAFKERLVVHQKIH 826
                 789999*****************99 PP

4zf-C2H220.31.5e-06833856223
                 EET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                 +Cp   Cgk+F+ + +L+ H+rtH
  GBG59894.1 833 TCPweGCGKTFKWPNSLHGHMRTH 856
                 79999******************9 PP

5zf-C2H211.40.00097862886123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 +kC    Cg+ F  k +L+rH rtH
  GBG59894.1 862 FKCMypGCGRLFGYKVDLTRHNRTH 886
                 789999******************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 895 aa     Download sequence    
MMEEEENDNV GGWEDGMGAE EVAMGKGKDL IGGGNADDVR GEEVVMWGSA RCDNGLSWFQ  60
HAGFDGVDTH GDQWDEAANC ETHQKLMRLV SERHDGSLER FVNANVTSTA QMTEKSSKRV  120
MPKRPALTKW KRINIGCPAF GGSLATECAS LSRQSRGIGR SYTMKEFHSR WCHFTTWDLL  180
TSSRTSRPSS VSCVPGVSQC RWHGTEGSAD IARDSRAVEG DAVVGMQGDD PFAGAADVAT  240
NVTTVQGDVV VGERGDDPVA ETGKATMAGD ADEDAADEEA ADAAPSSSDV LCNPDAGLRL  300
VSVRPGREIW GCFGVGIPRD NKGCCWDDDG WSWGPGEGGA GEVLGILSDV AVLARAWDDD  360
EIRVVCEKLE LRKRKYTRQC KELGGRSAKV EQIFLKIWEL DDSHLEGWVL ETWMGNSPAM  420
LNNSTARCNN LGVEDEERDA ITNTIQDFPP TSSRKGGDAA ECDQFTALAP LAFAYWVEHT  480
STGFRHAIWK MDTFNHLAPL SIRELQFLGS VTDTQEGKEL RPVEYMSRKM PSKKSAKSTN  540
ERELYALYKA LVHWRHYLLG RFFYLRSDHQ TLKWIKTQPV LFDALKCWIE VMDQYDFKLD  600
YVKGEYNKVA DALSRRTRCL GALISESSLS KNVTRSLGEA YKEDPITMDI INKLKGKDEA  660
TTDEFVMVDG LLFLEKAGFK RFDQLKGNDA QELAMAFNSL AEKTPGVELT RSLLETSWED  720
LTIPQLEKML EETKKLLSVN EKVHDCLEPG CGRRFATPGN LRDHMNEHSG EKPYKCTTDG  780
CGARFPSKQL LCRHMKKHER AHVCTFEGCG KRFAFKERLV VHQKIHSDER PLTCPWEGCG  840
KTFKWPNSLH GHMRTHTGEK PFKCMYPGCG RLFGYKVDLT RHNRTHNGQP ARLSH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.13e-27C2H2 family protein