PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GBG59894.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
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Family | C2H2 | ||||||||
Protein Properties | Length: 895aa MW: 99990.6 Da PI: 6.2229 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.7 | 9.6e-06 | 747 | 768 | 4 | 23 |
T..TTTEEESSHHHHHHHHHHT CS zf-C2H2 4 p..dCgksFsrksnLkrHirtH 23 Cg++F ++ nL+ H++ H GBG59894.1 747 LepGCGRRFATPGNLRDHMNEH 768 5559****************99 PP | |||||||
2 | zf-C2H2 | 17.9 | 8.5e-06 | 774 | 798 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ykC+ Cg +F++k +L rH+++H GBG59894.1 774 YKCTtdGCGARFPSKQLLCRHMKKH 798 99**********************9 PP | |||||||
3 | zf-C2H2 | 15.1 | 6.8e-05 | 802 | 826 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cgk+F k+ L++H++ H GBG59894.1 802 HVCTfeGCGKRFAFKERLVVHQKIH 826 789999*****************99 PP | |||||||
4 | zf-C2H2 | 20.3 | 1.5e-06 | 833 | 856 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk+F+ + +L+ H+rtH GBG59894.1 833 TCPweGCGKTFKWPNSLHGHMRTH 856 79999******************9 PP | |||||||
5 | zf-C2H2 | 11.4 | 0.00097 | 862 | 886 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 +kC Cg+ F k +L+rH rtH GBG59894.1 862 FKCMypGCGRLFGYKVDLTRHNRTH 886 789999******************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 895 aa Download sequence |
MMEEEENDNV GGWEDGMGAE EVAMGKGKDL IGGGNADDVR GEEVVMWGSA RCDNGLSWFQ 60 HAGFDGVDTH GDQWDEAANC ETHQKLMRLV SERHDGSLER FVNANVTSTA QMTEKSSKRV 120 MPKRPALTKW KRINIGCPAF GGSLATECAS LSRQSRGIGR SYTMKEFHSR WCHFTTWDLL 180 TSSRTSRPSS VSCVPGVSQC RWHGTEGSAD IARDSRAVEG DAVVGMQGDD PFAGAADVAT 240 NVTTVQGDVV VGERGDDPVA ETGKATMAGD ADEDAADEEA ADAAPSSSDV LCNPDAGLRL 300 VSVRPGREIW GCFGVGIPRD NKGCCWDDDG WSWGPGEGGA GEVLGILSDV AVLARAWDDD 360 EIRVVCEKLE LRKRKYTRQC KELGGRSAKV EQIFLKIWEL DDSHLEGWVL ETWMGNSPAM 420 LNNSTARCNN LGVEDEERDA ITNTIQDFPP TSSRKGGDAA ECDQFTALAP LAFAYWVEHT 480 STGFRHAIWK MDTFNHLAPL SIRELQFLGS VTDTQEGKEL RPVEYMSRKM PSKKSAKSTN 540 ERELYALYKA LVHWRHYLLG RFFYLRSDHQ TLKWIKTQPV LFDALKCWIE VMDQYDFKLD 600 YVKGEYNKVA DALSRRTRCL GALISESSLS KNVTRSLGEA YKEDPITMDI INKLKGKDEA 660 TTDEFVMVDG LLFLEKAGFK RFDQLKGNDA QELAMAFNSL AEKTPGVELT RSLLETSWED 720 LTIPQLEKML EETKKLLSVN EKVHDCLEPG CGRRFATPGN LRDHMNEHSG EKPYKCTTDG 780 CGARFPSKQL LCRHMKKHER AHVCTFEGCG KRFAFKERLV VHQKIHSDER PLTCPWEGCG 840 KTFKWPNSLH GHMRTHTGEK PFKCMYPGCG RLFGYKVDLT RHNRTHNGQP ARLSH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48430.1 | 3e-27 | C2H2 family protein |