PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG59355.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

AP2

Protein Properties

Length: 542aa MW: 60927.6 Da PI: 9.7209

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG59355.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	22.3	3.3e-07	135	177	2	51
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaark 51 ++GV+ k+ +Wv +Ir+ + +++lg f ++ eAa+++++a+ GBG59355.1 135 IFRGVY--KTGLKWVTHIRV------NgNTVYLGAFFSEVEAARLYDRAAY 177 6897..43457***......44******99******985 PP
2	AP2	30.3	1e-09	326	369	1	51
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaark 51 s+++GV+ + + +W A I++ + k+ +lg+ t+e Aa ++++a+ GBG59355.1 326 SQFRGVYKN--NSKWQAGIKV------NgKQLHLGTVSTEEAAAHLYDRAAY 369 789*855..56****......44*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MVSIRKKKSI ADLRTKSVKQ EPQSSSQPAS SVVEPAVATP GEGQVVSSSP SEYVQGSPRL 60 FAEQEIIAKR SELSLTPPTG DRASNAVHPD TENSAQSLKK RKRISSIERD HDRTRNREWD 120 GDEPLQPPPN KLQSIFRGVY KTGLKWVTHI RVNGNTVYLG AFFSEVEAAR LYDRAAYICK 180 RPPNFVMTDE EKNALDKLAW DEFLTKTKQE IAILARQEKK DRNNNSVEPP RRVSHYTGVF 240 STGRKWVAHI RVDGSTVFLG VVNSEDEASH LFDRIHTILL KLQTKCLSAT LRERYPSGRL 300 VPCEMRNGVD QYVHAVDEVK KLKEKSQFRG VYKNNSKWQA GIKVNGKQLH LGTVSTEEAA 360 AHLYDRAAYI LGRDTNLPIV TAEKEDLDKM TWEEFIASTK GGMLLKRDCR AKLSGRGGAR 420 LKTRGRNTAQ CDTEEKREDQ PVMVQPEREE VARLSPPVTR RSSIMAGRDR DRECSPAKDS 480 SLRAKRTKTD SAGHGKVQNF DQGSDSSMHF ADVNDTANAA DDTESRTRWM ISCLVEALEQ 540 HP

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MVSIRKKKSI ADLRTKSVKQ EPQSSSQPAS SVVEPAVATP GEGQVVSSSP SEYVQGSPRL  60
FAEQEIIAKR SELSLTPPTG DRASNAVHPD TENSAQSLKK RKRISSIERD HDRTRNREWD  120
GDEPLQPPPN KLQSIFRGVY KTGLKWVTHI RVNGNTVYLG AFFSEVEAAR LYDRAAYICK  180
RPPNFVMTDE EKNALDKLAW DEFLTKTKQE IAILARQEKK DRNNNSVEPP RRVSHYTGVF  240
STGRKWVAHI RVDGSTVFLG VVNSEDEASH LFDRIHTILL KLQTKCLSAT LRERYPSGRL  300
VPCEMRNGVD QYVHAVDEVK KLKEKSQFRG VYKNNSKWQA GIKVNGKQLH LGTVSTEEAA  360
AHLYDRAAYI LGRDTNLPIV TAEKEDLDKM TWEEFIASTK GGMLLKRDCR AKLSGRGGAR  420
LKTRGRNTAQ CDTEEKREDQ PVMVQPEREE VARLSPPVTR RSSIMAGRDR DRECSPAKDS  480
SLRAKRTKTD SAGHGKVQNF DQGSDSSMHF ADVNDTANAA DDTESRTRWM ISCLVEALEQ  540
HP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13040.2	2e-20	ERF family protein