PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PHT60553.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 234aa MW: 27041.8 Da PI: 9.7942 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.6 | 4.5e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLC+ae+a+i+fs++g++yeys+ PHT60553.1 9 KRIENNTNRQVTFCKRRNGLLKKAYELSVLCEAEIALIVFSTRGRVYEYSN 59 79***********************************************95 PP | |||||||
2 | K-box | 102.9 | 4.1e-34 | 80 | 173 | 8 | 100 |
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++e +a+ +qqe++kL+++i+++q+++Rhl+Ge+L+sL+++eL+qLe++Le++l++iRskK+e++l+++e+lqk+e +l++en+ Lr+k++e PHT60553.1 80 CtTQELNAQFYQQESKKLRQQIQMMQNSNRHLVGEGLGSLNVRELKQLENRLERGLSRIRSKKHEMILAETENLQKREIQLEQENTFLRSKIAE 173 2478899************************************************************************************986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 234 aa Download sequence |
MGRGKIEIKR IENNTNRQVT FCKRRNGLLK KAYELSVLCE AEIALIVFST RGRVYEYSNN 60 NIKATIERYK KATAEHSNAC TTQELNAQFY QQESKKLRQQ IQMMQNSNRH LVGEGLGSLN 120 VRELKQLENR LERGLSRIRS KKHEMILAET ENLQKREIQL EQENTFLRSK IAENERLQEL 180 SMMPAGGGQE YSAIQHYLAG NMLQLNMMEG QAGVSTSYDP LSPHHHDKKS LHLH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G09960.1 | 1e-99 | MIKC_MADS family protein |