PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT59895.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | NF-YC | ||||||||
Protein Properties | Length: 258aa MW: 28458.2 Da PI: 6.1482 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 177.1 | 1.7e-55 | 80 | 183 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 ql+sfw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlr+w+h+eenkrrtl+k+diaaa+trtdifdflvdiv PHT59895.1 80 QLQSFWANQyqeIEHVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 178 89******99999************************************************************************************** PP NF-YC 97 prdel 101 pr++l PHT59895.1 179 PREDL 183 **987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence |
MDHHGNGQPP GIGVITSSAP VYGAPYQANQ MAGPSPPAVS AGTIQSPQAA GLSASSAQMA 60 QHQIAYQQIH QQQQQQLQQQ LQSFWANQYQ EIEHVTDFKN HSLPLARIKK IMKADEDVRM 120 ISAEAPVVFA RACEMFILEL TLRAWNHTEE NKRRTLQKND IAAAITRTDI FDFLVDIVPR 180 EDLKDDVLAS IPRGTLPVGG PTEGLPFYYG MPPQSAPPMG APGLYMGKPV DQALYAQQPR 240 PYMAQPIWPQ QQQPPSDP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 153 | 159 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.3 | 1e-80 | NF-YC family protein |