PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT59720.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MIKC_MADS
Protein Properties Length: 257aa    MW: 29047.8 Da    PI: 7.0365
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT59720.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.21e-28959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k ien  nrqvtfskRr+g+lKKA+ELSvLCd evaviifsstgkl+e+ss
  PHT59720.1  9 KLIENVNNRQVTFSKRRAGLLKKASELSVLCDSEVAVIIFSSTGKLFEFSS 59
                569**********************************************96 PP

2K-box54.16.9e-1995174988
       K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                 ++++  ++ q+e++ Lk+e+ +L+++q +llG+dL+ + l+eL+ Le+qL+++l  i+++K+ell++q+e+++k+ +el+
  PHT59720.1  95 QQTHFLKQEQKEVDSLKDELAKLKTKQLRLLGKDLNGMGLNELRLLEHQLNEGLLAIKERKEELLIQQLEHSRKQVEELR 174
                 44445678899****************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MGRGKIDIKL IENVNNRQVT FSKRRAGLLK KASELSVLCD SEVAVIIFSS TGKLFEFSST  60
SMKQTLSRYN RCVSSTESSA VEKKSEGNEQ PQSQQQTHFL KQEQKEVDSL KDELAKLKTK  120
QLRLLGKDLN GMGLNELRLL EHQLNEGLLA IKERKEELLI QQLEHSRKQV EELRGLYPVS  180
SCLPTAYLEY HHPLEKKYPI LKESEESLDS DTACEDGVDN EDSNTTLQLG LPTIGRKRKK  240
PEQESPSSNS ENQVGSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236240RKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.14e-61MIKC_MADS family protein