PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT59274.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NF-YA
Protein Properties Length: 297aa    MW: 32108.3 Da    PI: 6.5099
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT59274.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.91.2e-31167223158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 +ep+YVNaKQy++Il+RR++Rak+e ekkl +k rkpylheSRh+hAl+R+R+sgGrF
  PHT59274.1 167 QEPVYVNAKQYHGILRRRESRAKAELEKKL-IKVRKPYLHESRHQHALKRARASGGRF 223
                 69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MQSKSKSANC VEARTYNVPN STVFSEPWWN TAGNNPVSLG LMGGSASDPP SAEQAVDGGS  60
QSDDGSNEED DDAPEISETT IPMHSGSYAQ VDQNLQSIAS TIPPKGDGSL TQPPQLEPVA  120
HSMACAPNLY VDPYYGGMLT PFGQHMVPPH VLDLHHPRMP LPHEMAQEPV YVNAKQYHGI  180
LRRRESRAKA ELEKKLIKVR KPYLHESRHQ HALKRARASG GRFAKKSDAD TSKGAGSGSE  240
PLLSSAPDVA EWHKDRSLAE HQHSYSNGSG YGKQNSFQEP NYQAQSAQVG EGGSSGQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.21e-54NF-YA family protein