PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT59161.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 277aa MW: 28370.2 Da PI: 7.5023

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT59161.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.8	1.2e-40	48	148	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael++l+ PHT59161.1 48 PCGACKFLRRKCVANCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQ 146 7*********************9989******************************************************************999 PP DUF260 99 ee 100 ++ PHT59161.1 147 AH 148 86 PP

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence
MSSNPSSSTG GTVTATVGGV GGGTSGSTSS GGGGGGGGGG GGGSGGGPCG ACKFLRRKCV 60 ANCIFAPYFD SEQGAAHFAA VHKVFGASNV SKLLLHIPVH KRLDAVVTIC YEAQARLRDP 120 VYGCVAHIFA LQQQVVNLQA ELSYLQAHLA TLELPTPPPP PPPPQQPPTM LQQPALTIAD 180 LPTAGSSLPA AYDLSSLFDP MVQPSWAMQQ QSRPPPPPLM EPRQFVGSTR PPVDMSPSTS 240 GGGSGDLQEL ARELLHRHGS PTVPCTEPSA LPPPQTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45420.1	4e-79	LBD family protein