PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT58839.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 337aa    MW: 38985 Da    PI: 6.8328
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT58839.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS474.5e-1554130180
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 
                 l+e+L++cA+a+++++l+ a++++++l+  +s  g+pmq l  y++e+L arl + +s++ykal+++e +   s+e +++
  PHT58839.1  54 LKEVLIACAKAIAENNLTIAEWIMSELRRVVSVCGSPMQPLGVYMLEGLVARLDSLGSSIYKALKCKEPT---SVEIFSI 130
                 5789****************************************************************98...4444444 PP
2GRAS184.28.9e-57137317183364
        GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                 + +++d+e+++L+v+pgE laVn++l l +++des+ ++++rd++L++vkslsPk+v++veq++++n  +F+  fle+l+yy ++f+s+++ lpr+++e
  PHT58839.1 137 SVHTSDVEIKDLNVRPGEPLAVNFALVLNHMHDESAGTQNHRDRLLRMVKSLSPKIVTLVEQDSNTNIVQFFSYFLETLNYYLSVFESIDVALPRDHKE 235
                 348899********************************************************************************************* PP

        GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                 ri+vE+++l+ +i+n+   e+a+r+erhe le+Wr+r+++aGFkp+pls+++++++k+ll++++ + y+ + ++g l++gW++
  PHT58839.1 236 RINVEQHCLAHKIMNIHEYEEAKRVERHELLERWRSRFSMAGFKPYPLSSSINATIKTLLENYY-RSYTFDMKNGVLYFGWMN 317
                 ****************************************************************.66**************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    
MQIEVKVQCL GLDHRVSRFY NKPNEFNKFY NQPIKYQDSF FLPSVNFLNN NQCLKEVLIA  60
CAKAIAENNL TIAEWIMSEL RRVVSVCGSP MQPLGVYMLE GLVARLDSLG SSIYKALKCK  120
EPTSVEIFSI CTCFMKSVHT SDVEIKDLNV RPGEPLAVNF ALVLNHMHDE SAGTQNHRDR  180
LLRMVKSLSP KIVTLVEQDS NTNIVQFFSY FLETLNYYLS VFESIDVALP RDHKERINVE  240
QHCLAHKIMN IHEYEEAKRV ERHELLERWR SRFSMAGFKP YPLSSSINAT IKTLLENYYR  300
SYTFDMKNGV LYFGWMNGDE SQFGCFLCLE IVILPEV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.14e-83GRAS family protein