PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT58198.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 167aa MW: 19091.5 Da PI: 9.5889 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42.9 | 6.4e-14 | 15 | 63 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k ie+k r+v fskR+ng+ KKA+E S L++ +v i+f + gk + y PHT58198.1 15 KLIESKEARTVAFSKRKNGLGKKAKEYSNLTGEDVGFILFTQAGKPHSY 63 569*****************************************98887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence |
MDKRGGKGRQ KIEMKLIESK EARTVAFSKR KNGLGKKAKE YSNLTGEDVG FILFTQAGKP 60 HSYGSPSREK VIDKFHELKE NDSLQNHTDM SKTNVIETFE DLRKEVQAFK EKYLDSKMSI 120 DKHTLENRLG SLSCFSFTSE TRDDPELLFT YTLPSAESTK RTPSRES |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36590.1 | 3e-18 | M-type_MADS family protein |