PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT58192.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 170aa    MW: 19628.6 Da    PI: 9.9746
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT58192.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.43.7e-131561147
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                k ie+k  r+v fskR+ng+ KKA+E S L++ +v  i+f + gk +
  PHT58192.1 15 KLIESKEARTVAFSKRKNGLGKKAKEYSNLTGEDVGFILFKQAGKPH 61
                569*************************************9999866 PP
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    
MAKRGGKGRQ KIEMKLIESK EARTVAFSKR KNGLGKKAKE YSNLTGEDVG FILFKQAGKP  60
HFYGSPSIEK VIDKFHELKQ NDSLQNHTDM SKINFFEAFE DLRKEVQGFK EKCLDSKMSI  120
DKHTLENWLK KFEAYKSRLD KIKKEIKGDV PGEQFKFISE VALDLEEMSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.16e-17M-type_MADS family protein