PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT58188.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 403aa MW: 45298.8 Da PI: 6.9396

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT58188.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00061	17	38	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C C++ F++ L H+r+H PHT58188.1 17 YCRVCKRGFNSAGALGGHMRSH 38 5********************9 PP
2	zf-C2H2	10.8	0.0015	159	181	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F+++ L H +H PHT58188.1 159 FQCKACKKVFNSHQALGGHRASH 181 89**************9999888 PP

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence
MSENNGQKSE PSSVILYCRV CKRGFNSAGA LGGHMRSHGA AGENNTRNYG EQVSEPKYTI 60 NNFRRDKSES QKHSYNLRTN SNRLVAGNNR STSDDRVDVE KSEYYYGRDG KEKQHSSREE 120 EDLANCLVML SSKSCDLSDD NNNNSESRNK AKEVEKGMFQ CKACKKVFNS HQALGGHRAS 180 HKKVKGCYAA KLDVDDDDTT NSNNDDNDID EDLMISTGDL ILHQESNSSQ SQSPSSSSFS 240 RKRSRVHQCS ICQRVFSSGQ ALGGHKRCHW LTSSMPETTF IPSFQEIQYH NQEQVLYNKP 300 IFTNHHQPLD LNFPAQLGNP AEVGLKLHSN PFEQESLKSS LQLWIDQQVD INQNHKCKYS 360 LSREEDIKSK EAKLSNLKDV NLDGGSSWLQ VGIDPTPDIL PTL

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence

MSENNGQKSE PSSVILYCRV CKRGFNSAGA LGGHMRSHGA AGENNTRNYG EQVSEPKYTI  60
NNFRRDKSES QKHSYNLRTN SNRLVAGNNR STSDDRVDVE KSEYYYGRDG KEKQHSSREE  120
EDLANCLVML SSKSCDLSDD NNNNSESRNK AKEVEKGMFQ CKACKKVFNS HQALGGHRAS  180
HKKVKGCYAA KLDVDDDDTT NSNNDDNDID EDLMISTGDL ILHQESNSSQ SQSPSSSSFS  240
RKRSRVHQCS ICQRVFSSGQ ALGGHKRCHW LTSSMPETTF IPSFQEIQYH NQEQVLYNKP  300
IFTNHHQPLD LNFPAQLGNP AEVGLKLHSN PFEQESLKSS LQLWIDQQVD INQNHKCKYS  360
LSREEDIKSK EAKLSNLKDV NLDGGSSWLQ VGIDPTPDIL PTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17180.1	2e-22	C2H2 family protein