PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT57216.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | LBD | ||||||||
Protein Properties | Length: 159aa MW: 18337.8 Da PI: 8.357 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.5 | 2.5e-39 | 11 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk++rrkC+++Cvlapyfpa+qpkkf+n+h+lFG++n++++l++l++e+ + dam+s+++e+++r + PvyG+v+ i+ l+qql+ + ++l++++ PHT57216.1 11 SCAACKYQRRKCTSQCVLAPYFPANQPKKFQNAHRLFGVRNIVRILEQLDDEDqKADAMKSIIFESDMREKFPVYGCVECIFYLRQQLQIALQQLQYVN 109 6************************************************666649*****************************************999 PP DUF260 99 ee 100 ++ PHT57216.1 110 AQ 111 87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence |
MRVKGVTSRV SCAACKYQRR KCTSQCVLAP YFPANQPKKF QNAHRLFGVR NIVRILEQLD 60 DEDQKADAMK SIIFESDMRE KFPVYGCVEC IFYLRQQLQI ALQQLQYVNA QLDIYRQQQQ 120 HSSESSVNNG RLSMLPFFSS TEAESISQGI TYSDFDVSN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 2e-38 | LBD family protein |