PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT57121.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 746aa MW: 84375.7 Da PI: 7.0772

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT57121.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	30.2	1.3e-09	7	62	1	56
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeered 56 +C aC +r+C ++C+ +p+fp ++ k++++ FG+ ++ + +++p e+r++ PHT57121.1 7 RCGACVEEGRQCDENCPWSPMFPPGRADKYRFLINYFGRPRLKREFNQTPVEQRPR 62 6************************************************9999754 PP

Sequence ? help Back to Top
Protein Sequence Length: 746 aa Download sequence
MAAPIIRCGA CVEEGRQCDE NCPWSPMFPP GRADKYRFLI NYFGRPRLKR EFNQTPVEQR 60 PRPVHFEDLF QDALLEFAHR NNGGVARRFR AMEQTIVQQQ AYIQFLLGLN FYGSWENFFR 120 TSLILDLQHC KAGTVTSESS TKPQPSSSYW VAPSASRPWT AESATRHWTS GWGFSTSEFS 180 TKPQPSSSYW AVESVSRPWT VDQHIGIGQQ DGVFQQVNPQ LNLNPPHHIR LQNQQTGLGQ 240 QVGIFPKVNT QLNLNPPHHI GQQDGINEHG WPPNDQFGIA LQHQQPDIGQ QLQKQNGINE 300 RGWPPNDQFG IALQDQQPGI GHQDGVFQQV NPHLNLNPLH HIGLQHQQAG LGQQEQQPDI 360 GQHDGVFQQV NPQVNLNLPH HIGLQNQHQA GLGQQVDIFQ QVNPQLNLNP PPHIWLQQQD 420 GFNEHEWPPD NQFGIALQDK QPASATRYWT TRWCLSTSES PTEPQPSSSY WVAESASRLW 480 TTGSTTRNWI AGWCFSTSGS STKNQPSSIC WVAKSASRIW IAGSATRHMT AEWCFSTIES 540 STKPQPSSSY WVSNHALDSR MVFSNKWILK PPHHIGLQNQ QAGLGLQVRI FQQVNPQLNL 600 NPPNHIGLQK QDGINEHRWP LNDQFGISLQ DQQLGIGRQD GFFRQVYPKL SLNLPHHVGL 660 QNQQAGLGQQ VGIFQQVNPQ LNLNPPHHIG LQQQDGINEH RWPPNDQFGI APQDQQPSIG 720 QQDGVFNQVN PQLNLNHPYH IGLQNQ

Sequence ? help Back to Top

Protein Sequence Length: 746 aa Download sequence

MAAPIIRCGA CVEEGRQCDE NCPWSPMFPP GRADKYRFLI NYFGRPRLKR EFNQTPVEQR  60
PRPVHFEDLF QDALLEFAHR NNGGVARRFR AMEQTIVQQQ AYIQFLLGLN FYGSWENFFR  120
TSLILDLQHC KAGTVTSESS TKPQPSSSYW VAPSASRPWT AESATRHWTS GWGFSTSEFS  180
TKPQPSSSYW AVESVSRPWT VDQHIGIGQQ DGVFQQVNPQ LNLNPPHHIR LQNQQTGLGQ  240
QVGIFPKVNT QLNLNPPHHI GQQDGINEHG WPPNDQFGIA LQHQQPDIGQ QLQKQNGINE  300
RGWPPNDQFG IALQDQQPGI GHQDGVFQQV NPHLNLNPLH HIGLQHQQAG LGQQEQQPDI  360
GQHDGVFQQV NPQVNLNLPH HIGLQNQHQA GLGQQVDIFQ QVNPQLNLNP PPHIWLQQQD  420
GFNEHEWPPD NQFGIALQDK QPASATRYWT TRWCLSTSES PTEPQPSSSY WVAESASRLW  480
TTGSTTRNWI AGWCFSTSGS STKNQPSSIC WVAKSASRIW IAGSATRHMT AEWCFSTIES  540
STKPQPSSSY WVSNHALDSR MVFSNKWILK PPHHIGLQNQ QAGLGLQVRI FQQVNPQLNL  600
NPPNHIGLQK QDGINEHRWP LNDQFGISLQ DQQLGIGRQD GFFRQVYPKL SLNLPHHVGL  660
QNQQAGLGQQ VGIFQQVNPQ LNLNPPHHIG LQQQDGINEH RWPPNDQFGI APQDQQPSIG  720
QQDGVFNQVN PQLNLNHPYH IGLQNQ