PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT57022.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

CO-like

Protein Properties

Length: 398aa MW: 44120.8 Da PI: 5.3855

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT57022.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22	3.4e-07	19	60	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 r+C+ +++ + +C ++ +lC C +H H++ PHT57022.1 19 RVCDSCHSAASTVYCWADSAYLCTGCDARIHAAslvasrHKR 60 79****99*******************66777777876 PP
2	CCT	69	1.3e-23	330	373	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRYkeK+k+RkFeK+irY+sRK++Ae+RpR+KGrF++++ PHT57022.1 330 REARVLRYKEKKKNRKFEKTIRYASRKVYAETRPRIKGRFARRT 373 9****************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MFKKENSGGF DGSSNNWARV CDSCHSAAST VYCWADSAYL CTGCDARIHA ASLVASRHKR 60 VWVCEALEHA PAAFLCKADA ASFCASCDAD IQSANPLAHL HHCVPIMPIP GTLSGPPAVD 120 TVGGGDSTEN YGFLRLTKDE DDMTIDEEDE DEAASWLLLN PPVTNNNKNN VNNNINNQNN 180 NCGMLFGGEV VDDYLDLAEY GGDNQFNDQY SVNQQQQLYS VPQKSYGGDS VVPVQDGQGK 240 SLIIYHQQQQ QQSHNLNFQL GVEYDNSNTR YGYPASMSHS VSISSMDVSV VPESALSENS 300 NSHPRPPKES IDLYSGHPIQ IPPHLAQMDR EARVLRYKEK KKNRKFEKTI RYASRKVYAE 360 TRPRIKGRFA RRTDIEAEVY QMLSTQLMTD SSYGIVPS

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MFKKENSGGF DGSSNNWARV CDSCHSAAST VYCWADSAYL CTGCDARIHA ASLVASRHKR  60
VWVCEALEHA PAAFLCKADA ASFCASCDAD IQSANPLAHL HHCVPIMPIP GTLSGPPAVD  120
TVGGGDSTEN YGFLRLTKDE DDMTIDEEDE DEAASWLLLN PPVTNNNKNN VNNNINNQNN  180
NCGMLFGGEV VDDYLDLAEY GGDNQFNDQY SVNQQQQLYS VPQKSYGGDS VVPVQDGQGK  240
SLIIYHQQQQ QQSHNLNFQL GVEYDNSNTR YGYPASMSHS VSISSMDVSV VPESALSENS  300
NSHPRPPKES IDLYSGHPIQ IPPHLAQMDR EARVLRYKEK KKNRKFEKTI RYASRKVYAE  360
TRPRIKGRFA RRTDIEAEVY QMLSTQLMTD SSYGIVPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	4e-82	CO-like family protein