PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT56985.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 28435.3 Da    PI: 10.0212
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT56985.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF892.5e-28959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+ rqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl+eys+
  PHT56985.1  9 KRIENKISRQVTFSKRRCGLLKKANEISVLCDADVALIVFSTKGKLFEYST 59
                79***********************************************96 PP

2K-box97.61.8e-32801746100
       K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  +  ++   e+++ e+ kL ++ e Lqr++Rh++G+dL++Lsl+eLq+Le q+++slk+iRs+Kn+l++e+i+elqkkek+l+e+n+ ++kkl+e
  PHT56985.1  80 MNPIDSDPKENWNLEYPKLMSRAELLQRNIRHYMGQDLDPLSLRELQSLELQIDTSLKRIRSRKNQLMHESISELQKKEKALHEQNNLINKKLKE 174
                 5556677789**********************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MGRGRVELKR IENKISRQVT FSKRRCGLLK KANEISVLCD ADVALIVFST KGKLFEYSTD  60
SSMESILERY ERYSYAERKM NPIDSDPKEN WNLEYPKLMS RAELLQRNIR HYMGQDLDPL  120
SLRELQSLEL QIDTSLKRIR SRKNQLMHES ISELQKKEKA LHEQNNLINK KLKEKQKTQP  180
NSGQNSATFH VPPSHSHHQL VPNLSIGGAF GGTREMNIDG SGQAAYPGSN NNSTLMPPWM  240
LRHVSNEG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.13e-81MIKC_MADS family protein